RNA–Protein interactions for RNA: ENST00000482399.5

VPS52-218, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2 BASIC

Gene VPS52, Length 3,338 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-218ENST00000482399 CEBPZQ03701 1054 aaKnown RBP15.28■□□□□ 0.04
VPS52-218ENST00000482399 HDGFL1Q5TGJ6 251 aa15.28■□□□□ 0.04
VPS52-218ENST00000482399 FAM173BQ6P4H8 233 aa15.28■□□□□ 0.04
VPS52-218ENST00000482399 CKAP2LQ8IYA6 745 aa15.28■□□□□ 0.04
VPS52-218ENST00000482399 NECAB1Q8N987 351 aa15.28■□□□□ 0.04
VPS52-218ENST00000482399 JAKMIP1Q96N16 626 aaKnown RBP15.28■□□□□ 0.04
VPS52-218ENST00000482399 TET3O43151 1660 aa15.28■□□□□ 0.04
VPS52-218ENST00000482399 PPFIA3O75145 1194 aa15.28■□□□□ 0.04
VPS52-218ENST00000482399 NCBP3Q53F19 620 aaKnown RBP15.28■□□□□ 0.04
VPS52-218ENST00000482399 SLC26A8Q96RN1 970 aa15.28■□□□□ 0.04
VPS52-218ENST00000482399 CYB5RLQ6IPT4 315 aa15.27■□□□□ 0.04
VPS52-218ENST00000482399 SRCIN1Q9C0H9 1055 aa15.27■□□□□ 0.04
VPS52-218ENST00000482399 KIF1BO60333 1816 aa15.27■□□□□ 0.04
VPS52-218ENST00000482399 ZNF853P0CG23 659 aa15.27■□□□□ 0.03
VPS52-218ENST00000482399 NOLC1Q14978 699 aaKnown RBP eCLIP15.27■□□□□ 0.03
VPS52-218ENST00000482399 MTHFSDQ2M296 383 aaKnown RBP15.27■□□□□ 0.03
VPS52-218ENST00000482399 CCDC30Q5VVM6 783 aa15.27■□□□□ 0.03
VPS52-218ENST00000482399 TULP4Q9NRJ4 1543 aa15.26■□□□□ 0.03
VPS52-218ENST00000482399 BRD1O95696 1058 aa15.26■□□□□ 0.03
VPS52-218ENST00000482399 DNM1Q05193 864 aaKnown RBP15.26■□□□□ 0.03
VPS52-218ENST00000482399 PRPF40BQ6NWY9 871 aaKnown RBP15.26■□□□□ 0.03
VPS52-218ENST00000482399 TFIP11Q9UBB9 837 aaKnown RBP15.26■□□□□ 0.03
VPS52-218ENST00000482399 NPHP1O15259 732 aa15.25■□□□□ 0.03
VPS52-218ENST00000482399 NLRP6P59044 892 aa15.25■□□□□ 0.03
VPS52-218ENST00000482399 ZCCHC11Q5TAX3 1644 aaKnown RBP15.25■□□□□ 0.03
VPS52-218ENST00000482399 ATP6V1DQ9Y5K8 247 aa15.25■□□□□ 0.03
VPS52-218ENST00000482399 PTPRCP08575 1304 aa15.25■□□□□ 0.03
VPS52-218ENST00000482399 DYNC1I1O14576 645 aa15.25■□□□□ 0.03
VPS52-218ENST00000482399 STX6O43752 255 aa15.25■□□□□ 0.03
VPS52-218ENST00000482399 PPP1R42Q7Z4L9 355 aa15.25■□□□□ 0.03
VPS52-218ENST00000482399 BICD2Q8TD16 824 aa15.25■□□□□ 0.03
VPS52-218ENST00000482399 CHL1O00533 1208 aa15.25■□□□□ 0.03
VPS52-218ENST00000482399 ZNF500O60304 480 aaPredicted RBP15.25■□□□□ 0.03
VPS52-218ENST00000482399 CYP2E1P05181 493 aaPredicted RBP15.25■□□□□ 0.03
VPS52-218ENST00000482399 AIMP1Q12904 312 aaKnown RBP15.25■□□□□ 0.03
VPS52-218ENST00000482399 HS1BP3Q53T59 392 aa15.25■□□□□ 0.03
VPS52-218ENST00000482399 CCDC183Q5T5S1 534 aa15.25■□□□□ 0.03
VPS52-218ENST00000482399 C9orf78Q9NZ63 289 aaPredicted RBP15.25■□□□□ 0.03
VPS52-218ENST00000482399 SIL1Q9H173 461 aa15.24■□□□□ 0.03
VPS52-218ENST00000482399 KIF3AQ9Y496 699 aa15.24■□□□□ 0.03
VPS52-218ENST00000482399 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.24■□□□□ 0.03
VPS52-218ENST00000482399 QRICH2Q9H0J4 1663 aa15.24■□□□□ 0.03
VPS52-218ENST00000482399 IFIT2P09913 472 aaKnown RBP15.24■□□□□ 0.03
VPS52-218ENST00000482399 HSP90B1P14625 803 aaKnown RBP15.24■□□□□ 0.03
VPS52-218ENST00000482399 AK2P54819 239 aa15.24■□□□□ 0.03
VPS52-218ENST00000482399 PPP4R3BQ5MIZ7 849 aa15.24■□□□□ 0.03
VPS52-218ENST00000482399 CNTROBQ8N137 903 aa15.24■□□□□ 0.03
VPS52-218ENST00000482399 TRIM5Q9C035 493 aa15.24■□□□□ 0.03
VPS52-218ENST00000482399 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.23■□□□□ 0.03
VPS52-218ENST00000482399 BRPF1P55201 1214 aaPredicted RBP15.23■□□□□ 0.03
VPS52-218ENST00000482399 PHAXQ9H814 394 aaKnown RBP15.23■□□□□ 0.03
VPS52-218ENST00000482399 EFCAB6Q5THR3 1501 aa15.23■□□□□ 0.03
VPS52-218ENST00000482399 SHPRHQ149N8 1683 aa15.23■□□□□ 0.03
VPS52-218ENST00000482399 SYT1P21579 422 aa15.23■□□□□ 0.03
VPS52-218ENST00000482399 LARP1BQ659C4 914 aaKnown RBP15.23■□□□□ 0.03
VPS52-218ENST00000482399 GOLGA6L6A8MZA4 724 aa15.22■□□□□ 0.03
VPS52-218ENST00000482399 ZKSCAN1P17029 563 aaPredicted RBP15.22■□□□□ 0.03
VPS52-218ENST00000482399 GJB2P29033 226 aa15.22■□□□□ 0.03
VPS52-218ENST00000482399 FAM135BQ49AJ0 1406 aa15.22■□□□□ 0.03
VPS52-218ENST00000482399 TAF7Q15545 349 aaPredicted RBP15.22■□□□□ 0.03
VPS52-218ENST00000482399 C16orf45Q96MC5 204 aaPredicted RBP15.22■□□□□ 0.03
VPS52-218ENST00000482399 POGZQ7Z3K3 1410 aa15.22■□□□□ 0.03
VPS52-218ENST00000482399 PDLIM2Q96JY6 352 aa15.22■□□□□ 0.03
VPS52-218ENST00000482399 PDRG1Q9NUG6 133 aa15.22■□□□□ 0.03
VPS52-218ENST00000482399 LRRC7Q96NW7 1537 aa15.22■□□□□ 0.03
VPS52-218ENST00000482399 CHD1O14646 1710 aa15.21■□□□□ 0.03
VPS52-218ENST00000482399 ACEP12821 1306 aa15.21■□□□□ 0.03
VPS52-218ENST00000482399 PTCH1Q13635 1447 aa15.21■□□□□ 0.03
VPS52-218ENST00000482399 SHROOM2Q13796 1616 aa15.21■□□□□ 0.03
VPS52-218ENST00000482399 ZSCAN22P10073 491 aaPredicted RBP15.21■□□□□ 0.03
VPS52-218ENST00000482399 VIRMAQ69YN4 1812 aaKnown RBP15.21■□□□□ 0.03
VPS52-218ENST00000482399 CLASRPQ8N2M8 674 aaKnown RBP15.21■□□□□ 0.03
VPS52-218ENST00000482399 IL25Q9H293 177 aa15.21■□□□□ 0.03
VPS52-218ENST00000482399 LIMCH1Q9UPQ0 1083 aa15.21■□□□□ 0.03
VPS52-218ENST00000482399 MCM5P33992 734 aa15.2■□□□□ 0.02
VPS52-218ENST00000482399 IBTKQ9P2D0 1353 aaPredicted RBP15.2■□□□□ 0.02
VPS52-218ENST00000482399 HMGN5P82970 282 aaKnown RBP15.2■□□□□ 0.02
VPS52-218ENST00000482399 CLEC17AQ6ZS10 378 aa15.2■□□□□ 0.02
VPS52-218ENST00000482399 ZFYVE9O95405 1425 aa15.2■□□□□ 0.02
VPS52-218ENST00000482399 RASEFQ8IZ41 740 aa15.2■□□□□ 0.02
VPS52-218ENST00000482399 ATP8B2P98198 1209 aa15.19■□□□□ 0.02
VPS52-218ENST00000482399 MTERF4Q7Z6M4 381 aaKnown RBP15.19■□□□□ 0.02
VPS52-218ENST00000482399 FAM184AQ8NB25 1140 aa15.19■□□□□ 0.02
VPS52-218ENST00000482399 RHPN1Q8TCX5 695 aa15.19■□□□□ 0.02
VPS52-218ENST00000482399 CYP46A1Q9Y6A2 500 aa15.19■□□□□ 0.02
VPS52-218ENST00000482399 CCDC192P0DO97 292 aa15.19■□□□□ 0.02
VPS52-218ENST00000482399 FAM69CQ0P6D2 419 aa15.19■□□□□ 0.02
VPS52-218ENST00000482399 PDCL2Q8N4E4 241 aa15.19■□□□□ 0.02
VPS52-218ENST00000482399 RBM33Q96EV2 1170 aaKnown RBP15.19■□□□□ 0.02
VPS52-218ENST00000482399 DDX11Q96FC9 970 aa15.19■□□□□ 0.02
VPS52-218ENST00000482399 H3BQV1 296 aa15.19■□□□□ 0.02
VPS52-218ENST00000482399 UBE2HP62256 183 aa15.19■□□□□ 0.02
VPS52-218ENST00000482399 TEFQ10587 303 aa15.19■□□□□ 0.02
VPS52-218ENST00000482399 IFFO2Q5TF58 517 aa15.19■□□□□ 0.02
VPS52-218ENST00000482399 PA2G4Q9UQ80 394 aaKnown RBP15.19■□□□□ 0.02
VPS52-218ENST00000482399 GLI2P10070 1586 aa15.18■□□□□ 0.02
VPS52-218ENST00000482399 CCDC8Q9H0W5 538 aaPredicted RBP15.18■□□□□ 0.02
VPS52-218ENST00000482399 PI4KAP2A4QPH2 592 aa15.18■□□□□ 0.02
VPS52-218ENST00000482399 ZNF771Q7L3S4 317 aaPredicted RBP15.18■□□□□ 0.02
VPS52-218ENST00000482399 LUZP1Q86V48 1076 aa15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms