RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 MAP2K1Q02750 393 aaPredicted RBP8.46□□□□□ -1.06
HMGB1-207ENST00000468384 KRT28Q7Z3Y7 464 aa8.46□□□□□ -1.06
HMGB1-207ENST00000468384 TNS3Q68CZ2 1445 aa8.46□□□□□ -1.06
HMGB1-207ENST00000468384 TRIOBPQ9H2D6 2365 aa8.46□□□□□ -1.06
HMGB1-207ENST00000468384 COL14A1Q05707 1796 aaKnown RBP8.45□□□□□ -1.06
HMGB1-207ENST00000468384 DGKZQ13574 1117 aa8.45□□□□□ -1.06
HMGB1-207ENST00000468384 IFNLR1Q8IU57 520 aaPredicted RBP8.45□□□□□ -1.06
HMGB1-207ENST00000468384 ZBED2Q9BTP6 218 aa8.45□□□□□ -1.06
HMGB1-207ENST00000468384 IGSF1Q8N6C5 1336 aa8.45□□□□□ -1.06
HMGB1-207ENST00000468384 CCDC144AA2RUR9 1427 aa8.45□□□□□ -1.06
HMGB1-207ENST00000468384 PHRF1Q9P1Y6 1649 aaKnown RBP8.44□□□□□ -1.06
HMGB1-207ENST00000468384 METP08581 1390 aa8.44□□□□□ -1.06
HMGB1-207ENST00000468384 PLEKHG2Q9H7P9 1386 aa8.44□□□□□ -1.06
HMGB1-207ENST00000468384 LRRIQ1Q96JM4 1722 aa8.43□□□□□ -1.06
HMGB1-207ENST00000468384 PEAK1Q9H792 1746 aa8.43□□□□□ -1.06
HMGB1-207ENST00000468384 PKDCCQ504Y2 493 aa8.43□□□□□ -1.06
HMGB1-207ENST00000468384 LMOD2Q6P5Q4 547 aa8.43□□□□□ -1.06
HMGB1-207ENST00000468384 KRTAP1-3Q8IUG1 177 aa8.43□□□□□ -1.06
HMGB1-207ENST00000468384 STRN4Q9NRL3 753 aa8.43□□□□□ -1.06
HMGB1-207ENST00000468384 PNPLA7Q6ZV29 1317 aa8.43□□□□□ -1.06
HMGB1-207ENST00000468384 UNC79Q9P2D8 2635 aa8.42□□□□□ -1.06
HMGB1-207ENST00000468384 TRIM67Q6ZTA4 783 aa8.42□□□□□ -1.06
HMGB1-207ENST00000468384 ANKK1Q8NFD2 765 aa8.42□□□□□ -1.06
HMGB1-207ENST00000468384 FAM122AQ96E09 287 aa8.42□□□□□ -1.06
HMGB1-207ENST00000468384 CCNB3Q8WWL7 1395 aa8.42□□□□□ -1.06
HMGB1-207ENST00000468384 CCDC141Q6ZP82 1450 aa8.42□□□□□ -1.06
HMGB1-207ENST00000468384 PAPPAQ13219 1627 aa8.42□□□□□ -1.06
HMGB1-207ENST00000468384 SBF2Q86WG5 1849 aa8.42□□□□□ -1.06
HMGB1-207ENST00000468384 HFM1A2PYH4 1435 aa8.41□□□□□ -1.06
HMGB1-207ENST00000468384 ARHGEF10O15013 1369 aa8.41□□□□□ -1.06
HMGB1-207ENST00000468384 ST8SIA5O15466 376 aa8.41□□□□□ -1.06
HMGB1-207ENST00000468384 C9orf131Q5VYM1 1079 aa8.41□□□□□ -1.06
HMGB1-207ENST00000468384 UNC80Q8N2C7 3258 aa8.41□□□□□ -1.06
HMGB1-207ENST00000468384 CACNA1GO43497 2377 aa8.41□□□□□ -1.06
HMGB1-207ENST00000468384 VIRMAQ69YN4 1812 aaKnown RBP8.4□□□□□ -1.06
HMGB1-207ENST00000468384 EIF2AK4Q9P2K8 1649 aaKnown RBP8.4□□□□□ -1.06
HMGB1-207ENST00000468384 PPP1R18Q6NYC8 613 aa8.4□□□□□ -1.06
HMGB1-207ENST00000468384 MYO5BQ9ULV0 1848 aa8.4□□□□□ -1.07
HMGB1-207ENST00000468384 PIEZO1Q92508 2521 aa8.39□□□□□ -1.07
HMGB1-207ENST00000468384 SOX12O15370 315 aa8.39□□□□□ -1.07
HMGB1-207ENST00000468384 TCP11L2Q8N4U5 519 aa8.39□□□□□ -1.07
HMGB1-207ENST00000468384 NBPF3Q9H094 633 aa8.39□□□□□ -1.07
HMGB1-207ENST00000468384 RAPGEFL1Q9UHV5 662 aa8.39□□□□□ -1.07
HMGB1-207ENST00000468384 TNRC6CQ9HCJ0 1690 aaKnown RBP8.39□□□□□ -1.07
HMGB1-207ENST00000468384 ATP7BP35670 1465 aa8.38□□□□□ -1.07
HMGB1-207ENST00000468384 PSME1Q06323 249 aa8.38□□□□□ -1.07
HMGB1-207ENST00000468384 ARHGAP27Q6ZUM4 889 aa8.38□□□□□ -1.07
HMGB1-207ENST00000468384 BEGAINQ9BUH8 593 aa8.38□□□□□ -1.07
HMGB1-207ENST00000468384 PRDM11Q9NQV5 511 aa8.38□□□□□ -1.07
HMGB1-207ENST00000468384 TSKSQ9UJT2 592 aa8.38□□□□□ -1.07
HMGB1-207ENST00000468384 ARHGEF5Q12774 1597 aa8.38□□□□□ -1.07
HMGB1-207ENST00000468384 CCDC18Q5T9S5 1454 aa8.38□□□□□ -1.07
HMGB1-207ENST00000468384 VEGFAP15692 232 aaPredicted RBP8.37□□□□□ -1.07
HMGB1-207ENST00000468384 RSPH4AQ5TD94 716 aa8.37□□□□□ -1.07
HMGB1-207ENST00000468384 SBNO1A3KN83 1393 aa8.36□□□□□ -1.07
HMGB1-207ENST00000468384 SPTBN5Q9NRC6 3674 aaKnown RBP8.36□□□□□ -1.07
HMGB1-207ENST00000468384 VCANP13611 3396 aa8.36□□□□□ -1.07
HMGB1-207ENST00000468384 NUTM2FA1L443 756 aa8.36□□□□□ -1.07
HMGB1-207ENST00000468384 SOWAHBA6NEL2 793 aa8.36□□□□□ -1.07
HMGB1-207ENST00000468384 ROBO2Q9HCK4 1378 aa8.35□□□□□ -1.07
HMGB1-207ENST00000468384 TSPY4P0CV99 314 aa8.35□□□□□ -1.07
HMGB1-207ENST00000468384 TSPY10P0CW01 314 aa8.35□□□□□ -1.07
HMGB1-207ENST00000468384 MSL1Q68DK7 614 aa8.35□□□□□ -1.07
HMGB1-207ENST00000468384 NYAP1Q6ZVC0 841 aa8.35□□□□□ -1.07
HMGB1-207ENST00000468384 LRRC4BQ9NT99 713 aa8.35□□□□□ -1.07
HMGB1-207ENST00000468384 TFCP2L1Q9NZI6 479 aa8.35□□□□□ -1.07
HMGB1-207ENST00000468384 NRXN3Q9Y4C0 1643 aa8.35□□□□□ -1.07
HMGB1-207ENST00000468384 BRD4O60885 1362 aaPredicted RBP8.35□□□□□ -1.07
HMGB1-207ENST00000468384 TTC28Q96AY4 2481 aa8.35□□□□□ -1.07
HMGB1-207ENST00000468384 WDR33Q9C0J8 1336 aaKnown RBP8.34□□□□□ -1.07
HMGB1-207ENST00000468384 GCC2Q8IWJ2 1684 aa8.34□□□□□ -1.07
HMGB1-207ENST00000468384 DGAT1O75907 488 aa8.34□□□□□ -1.07
HMGB1-207ENST00000468384 PTCD2Q8WV60 388 aaKnown RBP8.34□□□□□ -1.07
HMGB1-207ENST00000468384 BCL2L12Q9HB09 334 aa8.34□□□□□ -1.07
HMGB1-207ENST00000468384 THRAP3Q9Y2W1 955 aaKnown RBP8.34□□□□□ -1.07
HMGB1-207ENST00000468384 BCL9O00512 1426 aa8.34□□□□□ -1.07
HMGB1-207ENST00000468384 EVA1CP58658 441 aa8.33□□□□□ -1.08
HMGB1-207ENST00000468384 QSER1Q2KHR3 1735 aa8.33□□□□□ -1.08
HMGB1-207ENST00000468384 PARP4Q9UKK3 1724 aaKnown RBP8.33□□□□□ -1.08
HMGB1-207ENST00000468384 CDC42BPGQ6DT37 1551 aa8.32□□□□□ -1.08
HMGB1-207ENST00000468384 SSH2Q76I76 1423 aa8.32□□□□□ -1.08
HMGB1-207ENST00000468384 CHRNA2Q15822 529 aa8.32□□□□□ -1.08
HMGB1-207ENST00000468384 LARP1Q6PKG0 1096 aaKnown RBP8.32□□□□□ -1.08
HMGB1-207ENST00000468384 KCTD17Q8N5Z5 321 aa8.32□□□□□ -1.08
HMGB1-207ENST00000468384 CEP290O15078 2479 aa8.32□□□□□ -1.08
HMGB1-207ENST00000468384 FMN2Q9NZ56 1722 aa8.32□□□□□ -1.08
HMGB1-207ENST00000468384 CASP8AP2Q9UKL3 1982 aa8.31□□□□□ -1.08
HMGB1-207ENST00000468384 RASSF10A6NK89 507 aa8.31□□□□□ -1.08
HMGB1-207ENST00000468384 TMEM88BA6NKF7 163 aa8.31□□□□□ -1.08
HMGB1-207ENST00000468384 SUPT5HO00267 1087 aaKnown RBP8.31□□□□□ -1.08
HMGB1-207ENST00000468384 DEFB115Q30KQ5 88 aa8.31□□□□□ -1.08
HMGB1-207ENST00000468384 MARCH10Q8NA82 808 aaPredicted RBP8.31□□□□□ -1.08
HMGB1-207ENST00000468384 AAASQ9NRG9 546 aa8.31□□□□□ -1.08
HMGB1-207ENST00000468384 RNF181Q9P0P0 153 aa8.31□□□□□ -1.08
HMGB1-207ENST00000468384 BCS1LQ9Y276 419 aa8.31□□□□□ -1.08
HMGB1-207ENST00000468384 KANK1Q14678 1352 aa8.31□□□□□ -1.08
HMGB1-207ENST00000468384 PKD1L3Q7Z443 1732 aa8.3□□□□□ -1.08
HMGB1-207ENST00000468384 DDB1Q16531 1140 aa8.3□□□□□ -1.08
HMGB1-207ENST00000468384 COL26A1Q96A83 441 aa8.3□□□□□ -1.08
HMGB1-207ENST00000468384 DACH1Q9UI36 760 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 108.9 ms