RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 TNPO1Q92973 898 aaKnown RBP10.69□□□□□ -0.7
HPS4-206ENST00000439453 PKD1L3Q7Z443 1732 aa10.69□□□□□ -0.7
HPS4-206ENST00000439453 SOX12O15370 315 aa10.69□□□□□ -0.7
HPS4-206ENST00000439453 LARP1Q6PKG0 1096 aaKnown RBP10.69□□□□□ -0.7
HPS4-206ENST00000439453 TCP11L2Q8N4U5 519 aa10.69□□□□□ -0.7
HPS4-206ENST00000439453 COG3Q96JB2 828 aa10.69□□□□□ -0.7
HPS4-206ENST00000439453 GBP4Q96PP9 640 aa10.68□□□□□ -0.7
HPS4-206ENST00000439453 COL3A1P02461 1466 aaPredicted RBP10.68□□□□□ -0.7
HPS4-206ENST00000439453 SKOR2Q2VWA4 1001 aaPredicted RBP10.68□□□□□ -0.7
HPS4-206ENST00000439453 SNX21Q969T3 373 aa10.68□□□□□ -0.7
HPS4-206ENST00000439453 CIZ1Q9ULV3 898 aaPredicted RBP10.68□□□□□ -0.7
HPS4-206ENST00000439453 ERBB3P21860 1342 aa10.67□□□□□ -0.7
HPS4-206ENST00000439453 RXRBP28702 533 aa10.67□□□□□ -0.7
HPS4-206ENST00000439453 RRS1Q15050 365 aaKnown RBP10.67□□□□□ -0.7
HPS4-206ENST00000439453 PDCL3Q9H2J4 239 aa10.67□□□□□ -0.7
HPS4-206ENST00000439453 WDR17Q8IZU2 1322 aa10.67□□□□□ -0.7
HPS4-206ENST00000439453 ZKSCAN2Q63HK3 967 aa10.67□□□□□ -0.7
HPS4-206ENST00000439453 SMC5Q8IY18 1101 aa10.67□□□□□ -0.7
HPS4-206ENST00000439453 HOXC9P31274 260 aa10.67□□□□□ -0.7
HPS4-206ENST00000439453 FTSJ3Q8IY81 847 aaKnown RBP10.67□□□□□ -0.7
HPS4-206ENST00000439453 DZIP1LQ8IYY4 767 aaKnown RBP10.66□□□□□ -0.7
HPS4-206ENST00000439453 KIF24Q5T7B8 1368 aa10.66□□□□□ -0.7
HPS4-206ENST00000439453 PTMSP20962 102 aa10.66□□□□□ -0.7
HPS4-206ENST00000439453 RBM25P49756 843 aaKnown RBP10.66□□□□□ -0.7
HPS4-206ENST00000439453 HDAC1Q13547 482 aaPredicted RBP10.66□□□□□ -0.7
HPS4-206ENST00000439453 IP6K1Q92551 441 aa10.66□□□□□ -0.7
HPS4-206ENST00000439453 RAB3GAP1Q15042 981 aa10.66□□□□□ -0.7
HPS4-206ENST00000439453 KIAA1211Q6ZU35 1233 aa10.66□□□□□ -0.7
HPS4-206ENST00000439453 EMILIN1Q9Y6C2 1016 aa10.66□□□□□ -0.7
HPS4-206ENST00000439453 HSP90AB1P08238 724 aaKnown RBP10.65□□□□□ -0.7
HPS4-206ENST00000439453 CCDC173Q0VFZ6 552 aa10.65□□□□□ -0.7
HPS4-206ENST00000439453 POLKQ9UBT6 870 aa10.65□□□□□ -0.7
HPS4-206ENST00000439453 CCDC27Q2M243 656 aa10.65□□□□□ -0.7
HPS4-206ENST00000439453 STRN4Q9NRL3 753 aa10.65□□□□□ -0.7
HPS4-206ENST00000439453 MORC1Q86VD1 984 aa10.65□□□□□ -0.71
HPS4-206ENST00000439453 TOGARAM1Q9Y4F4 1720 aa10.64□□□□□ -0.71
HPS4-206ENST00000439453 FLT4P35916 1363 aa10.64□□□□□ -0.71
HPS4-206ENST00000439453 PPP1R9BQ96SB3 815 aa10.64□□□□□ -0.71
HPS4-206ENST00000439453 TNNT2P45379 298 aaPredicted RBP10.64□□□□□ -0.71
HPS4-206ENST00000439453 BARGINQ6ZT62 677 aa10.64□□□□□ -0.71
HPS4-206ENST00000439453 ZSCAN30Q86W11 494 aa10.64□□□□□ -0.71
HPS4-206ENST00000439453 MEGF6O75095 1541 aa10.63□□□□□ -0.71
HPS4-206ENST00000439453 ZBTB7CA1YPR0 619 aa10.63□□□□□ -0.71
HPS4-206ENST00000439453 OFD1O75665 1012 aa10.63□□□□□ -0.71
HPS4-206ENST00000439453 NASPP49321 788 aaPredicted RBP10.63□□□□□ -0.71
HPS4-206ENST00000439453 FAM98CQ17RN3 349 aaKnown RBP10.63□□□□□ -0.71
HPS4-206ENST00000439453 HSP90AB2PQ58FF8 381 aa10.63□□□□□ -0.71
HPS4-206ENST00000439453 ANKRD24Q8TF21 1146 aa10.63□□□□□ -0.71
HPS4-206ENST00000439453 DDX19BQ9UMR2 479 aa10.62□□□□□ -0.71
HPS4-206ENST00000439453 NHSQ6T4R5 1651 aa10.62□□□□□ -0.71
HPS4-206ENST00000439453 DOT1LQ8TEK3 1739 aa10.62□□□□□ -0.71
HPS4-206ENST00000439453 ITPRIPQ8IWB1 547 aa10.62□□□□□ -0.71
HPS4-206ENST00000439453 CARD10Q9BWT7 1032 aa10.62□□□□□ -0.71
HPS4-206ENST00000439453 SEPT12Q8IYM1 358 aa10.62□□□□□ -0.71
HPS4-206ENST00000439453 TRIM27P14373 513 aa10.61□□□□□ -0.71
HPS4-206ENST00000439453 ANP32BQ92688 251 aaKnown RBP10.61□□□□□ -0.71
HPS4-206ENST00000439453 SMC4Q9NTJ3 1288 aa10.61□□□□□ -0.71
HPS4-206ENST00000439453 TNS2Q63HR2 1409 aa10.61□□□□□ -0.71
HPS4-206ENST00000439453 CT47B1P0C2W7 299 aaPredicted RBP10.61□□□□□ -0.71
HPS4-206ENST00000439453 THRAP3Q9Y2W1 955 aaKnown RBP10.61□□□□□ -0.71
HPS4-206ENST00000439453 RGPD3A6NKT7 1758 aaPredicted RBP10.61□□□□□ -0.71
HPS4-206ENST00000439453 RGPD4Q7Z3J3 1758 aa10.61□□□□□ -0.71
HPS4-206ENST00000439453 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.61□□□□□ -0.71
HPS4-206ENST00000439453 FOXD4L1Q9NU39 408 aa10.61□□□□□ -0.71
HPS4-206ENST00000439453 ITGB4P16144 1822 aa10.6□□□□□ -0.71
HPS4-206ENST00000439453 NCBP3Q53F19 620 aaKnown RBP10.6□□□□□ -0.71
HPS4-206ENST00000439453 RREB1Q92766 1687 aa10.6□□□□□ -0.71
HPS4-206ENST00000439453 MSNP26038 577 aaKnown RBP10.6□□□□□ -0.71
HPS4-206ENST00000439453 KIF2CQ99661 725 aa10.6□□□□□ -0.71
HPS4-206ENST00000439453 GOLGA6L22H0YM25 854 aa10.6□□□□□ -0.71
HPS4-206ENST00000439453 TERF1P54274 439 aa10.6□□□□□ -0.71
HPS4-206ENST00000439453 SOCS7O14512 581 aa10.59□□□□□ -0.71
HPS4-206ENST00000439453 MTHFSP49914 203 aa10.59□□□□□ -0.71
HPS4-206ENST00000439453 RIPK4P57078 832 aa10.59□□□□□ -0.71
HPS4-206ENST00000439453 NUCB1Q02818 461 aa10.59□□□□□ -0.71
HPS4-206ENST00000439453 CALD1Q05682 793 aaKnown RBP10.59□□□□□ -0.71
HPS4-206ENST00000439453 NBPF6Q5VWK0 638 aa10.59□□□□□ -0.71
HPS4-206ENST00000439453 TSR2Q969E8 191 aaKnown RBP10.59□□□□□ -0.71
HPS4-206ENST00000439453 NBPF4Q96M43 638 aa10.59□□□□□ -0.71
HPS4-206ENST00000439453 CFAP53Q96M91 514 aa10.59□□□□□ -0.71
HPS4-206ENST00000439453 OVOS2A0A0G2JMS6 1433 aa10.59□□□□□ -0.71
HPS4-206ENST00000439453 CD2BP2O95400 341 aaKnown RBP10.59□□□□□ -0.71
HPS4-206ENST00000439453 SSFA2P28290 1259 aa10.59□□□□□ -0.71
HPS4-206ENST00000439453 EVA1CP58658 441 aa10.59□□□□□ -0.71
HPS4-206ENST00000439453 ATF7IPQ6VMQ6 1270 aa10.59□□□□□ -0.71
HPS4-206ENST00000439453 IBTKQ9P2D0 1353 aaPredicted RBP10.59□□□□□ -0.71
HPS4-206ENST00000439453 K7ELQ4 463 aaPredicted RBP10.59□□□□□ -0.71
HPS4-206ENST00000439453 LNPKQ9C0E8 428 aa10.59□□□□□ -0.71
HPS4-206ENST00000439453 BTAF1O14981 1849 aa10.58□□□□□ -0.72
HPS4-206ENST00000439453 AMPHP49418 695 aa10.58□□□□□ -0.72
HPS4-206ENST00000439453 EXOSC9Q06265 439 aaKnown RBP10.58□□□□□ -0.72
HPS4-206ENST00000439453 KLHL40Q2TBA0 621 aa10.58□□□□□ -0.72
HPS4-206ENST00000439453 TOM1L2Q6ZVM7 507 aa10.58□□□□□ -0.72
HPS4-206ENST00000439453 SSH1Q8WYL5 1049 aa10.58□□□□□ -0.72
HPS4-206ENST00000439453 ADAMTS7Q9UKP4 1686 aa10.58□□□□□ -0.72
HPS4-206ENST00000439453 RBM10P98175 930 aaKnown RBP10.58□□□□□ -0.72
HPS4-206ENST00000439453 ZBTB40Q9NUA8 1239 aa10.58□□□□□ -0.72
HPS4-206ENST00000439453 CCDC9Q9Y3X0 531 aaKnown RBP10.58□□□□□ -0.72
HPS4-206ENST00000439453 DDX49Q9Y6V7 483 aaKnown RBP10.58□□□□□ -0.72
HPS4-206ENST00000439453 EIF4A2Q14240 407 aaKnown RBP10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms