RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 PRDM4Q9UKN5 801 aa13.86□□□□□ -0.19
CUX1-204ENST00000393824 COL5A2P05997 1499 aaPredicted RBP13.86□□□□□ -0.19
CUX1-204ENST00000393824 COL22A1Q8NFW1 1626 aaPredicted RBP13.85□□□□□ -0.19
CUX1-204ENST00000393824 NFE2L2Q16236 605 aa13.85□□□□□ -0.19
CUX1-204ENST00000393824 SKOR2Q2VWA4 1001 aaPredicted RBP13.85□□□□□ -0.19
CUX1-204ENST00000393824 LARP1Q6PKG0 1096 aaKnown RBP13.85□□□□□ -0.19
CUX1-204ENST00000393824 GAS2L3Q86XJ1 694 aa13.85□□□□□ -0.19
CUX1-204ENST00000393824 PPP1R9BQ96SB3 815 aa13.85□□□□□ -0.19
CUX1-204ENST00000393824 RWDD1Q9H446 243 aaPredicted RBP13.85□□□□□ -0.19
CUX1-204ENST00000393824 BTG4Q9NY30 223 aa13.85□□□□□ -0.19
CUX1-204ENST00000393824 NCAPD2Q15021 1401 aa13.84□□□□□ -0.19
CUX1-204ENST00000393824 OFD1O75665 1012 aa13.84□□□□□ -0.19
CUX1-204ENST00000393824 CSB-PGBD3P0DP91 1061 aa13.84□□□□□ -0.19
CUX1-204ENST00000393824 PTMSP20962 102 aa13.84□□□□□ -0.19
CUX1-204ENST00000393824 CCDC173Q0VFZ6 552 aa13.84□□□□□ -0.19
CUX1-204ENST00000393824 MCM10Q7L590 875 aa13.84□□□□□ -0.19
CUX1-204ENST00000393824 MAP7D2Q96T17 732 aa13.84□□□□□ -0.19
CUX1-204ENST00000393824 CIZ1Q9ULV3 898 aaPredicted RBP13.84□□□□□ -0.19
CUX1-204ENST00000393824 CT47B1P0C2W7 299 aaPredicted RBP13.82□□□□□ -0.2
CUX1-204ENST00000393824 ZSCAN30Q86W11 494 aa13.82□□□□□ -0.2
CUX1-204ENST00000393824 HSCBQ8IWL3 235 aa13.82□□□□□ -0.2
CUX1-204ENST00000393824 MEGF6O75095 1541 aa13.82□□□□□ -0.2
CUX1-204ENST00000393824 TSR2Q969E8 191 aaKnown RBP13.82□□□□□ -0.2
CUX1-204ENST00000393824 SNX21Q969T3 373 aa13.82□□□□□ -0.2
CUX1-204ENST00000393824 FAM208AQ9UK61 1670 aaKnown RBP13.82□□□□□ -0.2
CUX1-204ENST00000393824 WDR17Q8IZU2 1322 aa13.82□□□□□ -0.2
CUX1-204ENST00000393824 BCL11BQ9C0K0 894 aaPredicted RBP13.81□□□□□ -0.2
CUX1-204ENST00000393824 LRP6O75581 1613 aa13.81□□□□□ -0.2
CUX1-204ENST00000393824 DLG5Q8TDM6 1919 aa13.81□□□□□ -0.2
CUX1-204ENST00000393824 TOM1L2Q6ZVM7 507 aa13.81□□□□□ -0.2
CUX1-204ENST00000393824 SMC5Q8IY18 1101 aa13.81□□□□□ -0.2
CUX1-204ENST00000393824 GBP4Q96PP9 640 aa13.81□□□□□ -0.2
CUX1-204ENST00000393824 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.8□□□□□ -0.2
CUX1-204ENST00000393824 TNPO1Q92973 898 aaKnown RBP13.8□□□□□ -0.2
CUX1-204ENST00000393824 EP400Q96L91 3159 aa13.8□□□□□ -0.2
CUX1-204ENST00000393824 JCADQ9P266 1359 aa13.8□□□□□ -0.2
CUX1-204ENST00000393824 ABCC6O95255 1503 aa13.79□□□□□ -0.2
CUX1-204ENST00000393824 IBTKQ9P2D0 1353 aaPredicted RBP13.79□□□□□ -0.2
CUX1-204ENST00000393824 RLBP1P12271 317 aa13.79□□□□□ -0.2
CUX1-204ENST00000393824 MFAP1P55081 439 aaKnown RBP13.79□□□□□ -0.2
CUX1-204ENST00000393824 RAB3GAP1Q15042 981 aa13.79□□□□□ -0.2
CUX1-204ENST00000393824 RBM25P49756 843 aaKnown RBP13.78□□□□□ -0.2
CUX1-204ENST00000393824 EVA1CP58658 441 aa13.78□□□□□ -0.2
CUX1-204ENST00000393824 HS1BP3Q53T59 392 aa13.78□□□□□ -0.2
CUX1-204ENST00000393824 IL17REQ8NFR9 667 aa13.78□□□□□ -0.2
CUX1-204ENST00000393824 C8orf37Q96NL8 207 aa13.78□□□□□ -0.2
CUX1-204ENST00000393824 MIS18AQ9NYP9 233 aa13.78□□□□□ -0.2
CUX1-204ENST00000393824 LGR6Q9HBX8 967 aa13.77□□□□□ -0.21
CUX1-204ENST00000393824 MVPQ14764 893 aaKnown RBP13.76□□□□□ -0.21
CUX1-204ENST00000393824 NASPP49321 788 aaPredicted RBP13.76□□□□□ -0.21
CUX1-204ENST00000393824 COL14A1Q05707 1796 aaKnown RBP13.76□□□□□ -0.21
CUX1-204ENST00000393824 MSNP26038 577 aaKnown RBP13.75□□□□□ -0.21
CUX1-204ENST00000393824 HDAC1Q13547 482 aaPredicted RBP13.75□□□□□ -0.21
CUX1-204ENST00000393824 ZNF530Q6P9A1 599 aaPredicted RBP13.75□□□□□ -0.21
CUX1-204ENST00000393824 MPRIPQ6WCQ1 1025 aa13.75□□□□□ -0.21
CUX1-204ENST00000393824 GAS2L2Q8NHY3 880 aa13.75□□□□□ -0.21
CUX1-204ENST00000393824 RAPGEF4Q8WZA2 1011 aa13.75□□□□□ -0.21
CUX1-204ENST00000393824 KRT24Q2M2I5 525 aa13.75□□□□□ -0.21
CUX1-204ENST00000393824 ZKSCAN2Q63HK3 967 aa13.75□□□□□ -0.21
CUX1-204ENST00000393824 CLEC17AQ6ZS10 378 aa13.75□□□□□ -0.21
CUX1-204ENST00000393824 ANP32BQ92688 251 aaKnown RBP13.75□□□□□ -0.21
CUX1-204ENST00000393824 CARD10Q9BWT7 1032 aa13.75□□□□□ -0.21
CUX1-204ENST00000393824 CRB1P82279 1406 aa13.74□□□□□ -0.21
CUX1-204ENST00000393824 GNAT3A8MTJ3 354 aa13.74□□□□□ -0.21
CUX1-204ENST00000393824 CYP27B1O15528 508 aa13.74□□□□□ -0.21
CUX1-204ENST00000393824 MTERF4Q7Z6M4 381 aaKnown RBP13.74□□□□□ -0.21
CUX1-204ENST00000393824 MBIPQ9NS73 344 aa13.74□□□□□ -0.21
CUX1-204ENST00000393824 PLCH1Q4KWH8 1693 aa13.74□□□□□ -0.21
CUX1-204ENST00000393824 SLIT2O94813 1529 aa13.74□□□□□ -0.21
CUX1-204ENST00000393824 MAP3K5Q99683 1374 aa13.74□□□□□ -0.21
CUX1-204ENST00000393824 BCL9LQ86UU0 1499 aa13.74□□□□□ -0.21
CUX1-204ENST00000393824 ZNF853P0CG23 659 aa13.74□□□□□ -0.21
CUX1-204ENST00000393824 ZNF500O60304 480 aaPredicted RBP13.73□□□□□ -0.21
CUX1-204ENST00000393824 SMAP1Q8IYB5 467 aaPredicted RBP13.73□□□□□ -0.21
CUX1-204ENST00000393824 TNNQ9UQP3 1299 aa13.73□□□□□ -0.21
CUX1-204ENST00000393824 EXOSC9Q06265 439 aaKnown RBP13.73□□□□□ -0.21
CUX1-204ENST00000393824 PLEKHO1Q53GL0 409 aaPredicted RBP13.73□□□□□ -0.21
CUX1-204ENST00000393824 DZIP1LQ8IYY4 767 aaKnown RBP13.73□□□□□ -0.21
CUX1-204ENST00000393824 TATP17735 454 aaPredicted RBP13.72□□□□□ -0.21
CUX1-204ENST00000393824 TSPYL6Q8N831 410 aa13.72□□□□□ -0.21
CUX1-204ENST00000393824 NGLY1Q96IV0 654 aa13.72□□□□□ -0.21
CUX1-204ENST00000393824 OVOS2A0A0G2JMS6 1433 aa13.72□□□□□ -0.21
CUX1-204ENST00000393824 ELL2O00472 640 aaPredicted RBP13.72□□□□□ -0.21
CUX1-204ENST00000393824 KLHL40Q2TBA0 621 aa13.72□□□□□ -0.21
CUX1-204ENST00000393824 NOL7Q9UMY1 257 aaKnown RBP13.72□□□□□ -0.21
CUX1-204ENST00000393824 NRAPQ86VF7 1730 aa13.71□□□□□ -0.21
CUX1-204ENST00000393824 CFAP44Q96MT7 982 aa13.71□□□□□ -0.21
CUX1-204ENST00000393824 SPATA31A6Q5VVP1 1343 aa13.71□□□□□ -0.21
CUX1-204ENST00000393824 KDM6AO15550 1401 aaPredicted RBP13.7□□□□□ -0.22
CUX1-204ENST00000393824 IL2RBP14784 551 aa13.7□□□□□ -0.22
CUX1-204ENST00000393824 PHKG2P15735 406 aa13.7□□□□□ -0.22
CUX1-204ENST00000393824 IL16Q14005 1332 aa13.7□□□□□ -0.22
CUX1-204ENST00000393824 AMOTQ4VCS5 1084 aa13.7□□□□□ -0.22
CUX1-204ENST00000393824 AKAP4Q5JQC9 854 aa13.7□□□□□ -0.22
CUX1-204ENST00000393824 CEMIPQ8WUJ3 1361 aa13.7□□□□□ -0.22
CUX1-204ENST00000393824 RTF1Q92541 710 aaKnown RBP13.7□□□□□ -0.22
CUX1-204ENST00000393824 BCL2L13Q9BXK5 485 aa13.7□□□□□ -0.22
CUX1-204ENST00000393824 DDX19BQ9UMR2 479 aa13.7□□□□□ -0.22
CUX1-204ENST00000393824 ZNF445P59923 1031 aa13.7□□□□□ -0.22
CUX1-204ENST00000393824 LMOD3Q0VAK6 560 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms