RNA–Protein interactions for RNA: ENST00000253794.6

VPS25-201, Transcript of vacuolar protein sorting 25 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS25, Length 1,101 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25-201ENST00000253794 NFATC2IPQ8NCF5 419 aa18.5■□□□□ 0.55
VPS25-201ENST00000253794 IL16Q14005 1332 aa18.49■□□□□ 0.55
VPS25-201ENST00000253794 BTAF1O14981 1849 aa18.49■□□□□ 0.55
VPS25-201ENST00000253794 TRIM37O94972 964 aa18.49■□□□□ 0.55
VPS25-201ENST00000253794 PTF1AQ7RTS3 328 aa18.49■□□□□ 0.55
VPS25-201ENST00000253794 RGPD3A6NKT7 1758 aaPredicted RBP18.49■□□□□ 0.55
VPS25-201ENST00000253794 RGPD4Q7Z3J3 1758 aa18.49■□□□□ 0.55
VPS25-201ENST00000253794 TAF7Q15545 349 aaPredicted RBP18.48■□□□□ 0.55
VPS25-201ENST00000253794 WDR63Q8IWG1 891 aa18.48■□□□□ 0.55
VPS25-201ENST00000253794 THUMPD2Q9BTF0 503 aaKnown RBP18.48■□□□□ 0.55
VPS25-201ENST00000253794 ZNF853P0CG23 659 aa18.47■□□□□ 0.55
VPS25-201ENST00000253794 SYTL4Q96C24 671 aaPredicted RBP18.47■□□□□ 0.55
VPS25-201ENST00000253794 PLSCR1O15162 318 aa18.46■□□□□ 0.55
VPS25-201ENST00000253794 IFT57Q9NWB7 429 aa18.46■□□□□ 0.55
VPS25-201ENST00000253794 KDM3BQ7LBC6 1761 aa18.45■□□□□ 0.54
VPS25-201ENST00000253794 UBR2Q8IWV8 1755 aa18.45■□□□□ 0.54
VPS25-201ENST00000253794 CHL1O00533 1208 aa18.45■□□□□ 0.54
VPS25-201ENST00000253794 UPF1Q92900 1129 aaKnown RBP eCLIP18.45■□□□□ 0.542e-8■■■■■ 30.7
VPS25-201ENST00000253794 SMARCC1Q92922 1105 aaPredicted RBP18.45■□□□□ 0.54
VPS25-201ENST00000253794 CFAP44Q96MT7 982 aa18.45■□□□□ 0.54
VPS25-201ENST00000253794 ATG3Q9NT62 314 aa18.45■□□□□ 0.54
VPS25-201ENST00000253794 CICQ96RK0 1608 aaPredicted RBP18.45■□□□□ 0.54
VPS25-201ENST00000253794 ZNF831Q5JPB2 1677 aa18.44■□□□□ 0.54
VPS25-201ENST00000253794 KCPQ6ZWJ8 1503 aa18.44■□□□□ 0.54
VPS25-201ENST00000253794 LY75O60449 1722 aa18.44■□□□□ 0.54
VPS25-201ENST00000253794 BTBD11A6QL63 1104 aa18.44■□□□□ 0.54
VPS25-201ENST00000253794 ZNF790Q6PG37 636 aa18.44■□□□□ 0.54
VPS25-201ENST00000253794 PALLDQ8WX93 1383 aa18.43■□□□□ 0.54
VPS25-201ENST00000253794 GNAI1P63096 354 aa18.43■□□□□ 0.54
VPS25-201ENST00000253794 HNRNPUQ00839 825 aaKnown RBP eCLIP18.43■□□□□ 0.54
VPS25-201ENST00000253794 ASAP1Q9ULH1 1129 aa18.43■□□□□ 0.54
VPS25-201ENST00000253794 ZBED9Q6R2W3 1325 aa18.43■□□□□ 0.54
VPS25-201ENST00000253794 HEG1Q9ULI3 1381 aa18.42■□□□□ 0.54
VPS25-201ENST00000253794 SENP3-EIF4A1A0A087X0R7 540 aa18.41■□□□□ 0.54
VPS25-201ENST00000253794 APBA3O96018 575 aa18.41■□□□□ 0.54
VPS25-201ENST00000253794 SALL2Q9Y467 1007 aaPredicted RBP18.41■□□□□ 0.54
VPS25-201ENST00000253794 KAT6BQ8WYB5 2073 aa18.41■□□□□ 0.54
VPS25-201ENST00000253794 SLC39A6Q13433 755 aa18.4■□□□□ 0.54
VPS25-201ENST00000253794 SF3B2Q13435 895 aaKnown RBP18.4■□□□□ 0.54
VPS25-201ENST00000253794 BAG6P46379 1132 aa18.39■□□□□ 0.53
VPS25-201ENST00000253794 GOLGA2Q08379 1002 aa18.39■□□□□ 0.53
VPS25-201ENST00000253794 TTC5Q8N0Z6 440 aa18.39■□□□□ 0.53
VPS25-201ENST00000253794 VSIG10Q8N0Z9 540 aa18.39■□□□□ 0.53
VPS25-201ENST00000253794 CAMKK2Q96RR4 588 aa18.39■□□□□ 0.53
VPS25-201ENST00000253794 TSPYL4Q9UJ04 414 aa18.39■□□□□ 0.53
VPS25-201ENST00000253794 SLC27A3Q5K4L6 730 aa18.38■□□□□ 0.53
VPS25-201ENST00000253794 MBIPQ9NS73 344 aa18.38■□□□□ 0.53
VPS25-201ENST00000253794 RREB1Q92766 1687 aa18.38■□□□□ 0.53
VPS25-201ENST00000253794 LOC102724428A0A0B4J2F2 783 aa18.37■□□□□ 0.53
VPS25-201ENST00000253794 E9PSI1 815 aa18.37■□□□□ 0.53
VPS25-201ENST00000253794 KCNQ3O43525 872 aa18.37■□□□□ 0.53
VPS25-201ENST00000253794 SIK1P57059 783 aa18.37■□□□□ 0.53
VPS25-201ENST00000253794 EIF4A1P60842 406 aaKnown RBP18.37■□□□□ 0.53
VPS25-201ENST00000253794 TRMT2AQ8IZ69 625 aaKnown RBP18.37■□□□□ 0.53
VPS25-201ENST00000253794 PROM2Q8N271 834 aa18.37■□□□□ 0.53
VPS25-201ENST00000253794 ZNF496Q96IT1 587 aaPredicted RBP18.37■□□□□ 0.53
VPS25-201ENST00000253794 FMNL2Q96PY5 1086 aa18.37■□□□□ 0.53
VPS25-201ENST00000253794 SLC4A9Q96Q91 983 aa18.37■□□□□ 0.53
VPS25-201ENST00000253794 SPINK5Q9NQ38 1064 aaPredicted RBP18.37■□□□□ 0.53
VPS25-201ENST00000253794 MIS18AQ9NYP9 233 aa18.37■□□□□ 0.53
VPS25-201ENST00000253794 HMGB2P26583 209 aaKnown RBP18.36■□□□□ 0.53
VPS25-201ENST00000253794 SLFN5Q08AF3 891 aa18.36■□□□□ 0.53
VPS25-201ENST00000253794 MYH16Q9H6N6 1097 aa18.36■□□□□ 0.53
VPS25-201ENST00000253794 FANCIQ9NVI1 1328 aa18.35■□□□□ 0.53
VPS25-201ENST00000253794 TXNRD1Q16881 649 aa18.35■□□□□ 0.53
VPS25-201ENST00000253794 TJP1Q07157 1748 aa18.35■□□□□ 0.53
VPS25-201ENST00000253794 C5P01031 1676 aa18.34■□□□□ 0.53
VPS25-201ENST00000253794 SOS1Q07889 1333 aaPredicted RBP18.34■□□□□ 0.53
VPS25-201ENST00000253794 HOXB7P09629 217 aa18.34■□□□□ 0.53
VPS25-201ENST00000253794 EN1Q05925 392 aaPredicted RBP18.34■□□□□ 0.53
VPS25-201ENST00000253794 PTCD1O75127 700 aaKnown RBP18.33■□□□□ 0.52
VPS25-201ENST00000253794 DEFB132Q7Z7B7 95 aa18.33■□□□□ 0.52
VPS25-201ENST00000253794 TEX13AQ9BXU3 409 aaPredicted RBP18.33■□□□□ 0.52
VPS25-201ENST00000253794 LRRC4BQ9NT99 713 aa18.33■□□□□ 0.52
VPS25-201ENST00000253794 CCNL1Q9UK58 526 aaPredicted RBP18.33■□□□□ 0.52
VPS25-201ENST00000253794 LAS1LQ9Y4W2 734 aaKnown RBP18.33■□□□□ 0.52
VPS25-201ENST00000253794 COL5A3P25940 1745 aaPredicted RBP18.32■□□□□ 0.52
VPS25-201ENST00000253794 GIGYF1O75420 1035 aaPredicted RBP18.32■□□□□ 0.52
VPS25-201ENST00000253794 SNRPA1P09661 255 aaKnown RBP18.32■□□□□ 0.52
VPS25-201ENST00000253794 EZH2Q15910 746 aaKnown RBP18.32■□□□□ 0.52
VPS25-201ENST00000253794 TSR2Q969E8 191 aaKnown RBP18.32■□□□□ 0.52
VPS25-201ENST00000253794 RBM42Q9BTD8 480 aaKnown RBP18.32■□□□□ 0.52
VPS25-201ENST00000253794 SOCS7O14512 581 aa18.31■□□□□ 0.52
VPS25-201ENST00000253794 ATP6V1AP38606 617 aa18.31■□□□□ 0.52
VPS25-201ENST00000253794 ITPK1Q13572 414 aa18.31■□□□□ 0.52
VPS25-201ENST00000253794 CDCA7LQ96GN5 454 aa18.31■□□□□ 0.52
VPS25-201ENST00000253794 TAF1LQ8IZX4 1826 aa18.3■□□□□ 0.52
VPS25-201ENST00000253794 LAMB4A4D0S4 1761 aa18.3■□□□□ 0.52
VPS25-201ENST00000253794 NUP188Q5SRE5 1749 aa18.3■□□□□ 0.52
VPS25-201ENST00000253794 DUSP27Q5VZP5 1158 aa18.3■□□□□ 0.52
VPS25-201ENST00000253794 CNTNAP4Q9C0A0 1308 aa18.28■□□□□ 0.52
VPS25-201ENST00000253794 CYP19A1P11511 503 aaPredicted RBP18.28■□□□□ 0.52
VPS25-201ENST00000253794 RC3H1Q5TC82 1133 aaKnown RBP18.28■□□□□ 0.52
VPS25-201ENST00000253794 DNAJC10Q8IXB1 793 aa18.28■□□□□ 0.52
VPS25-201ENST00000253794 LINC00116Q8NCU8 138 aa18.28■□□□□ 0.52
VPS25-201ENST00000253794 C4BP0C0L5 1744 aa18.27■□□□□ 0.52
VPS25-201ENST00000253794 KRT24Q2M2I5 525 aa18.27■□□□□ 0.52
VPS25-201ENST00000253794 C8orf58Q8NAV2 365 aa18.27■□□□□ 0.52
VPS25-201ENST00000253794 STARD3NLO95772 234 aa18.26■□□□□ 0.51
VPS25-201ENST00000253794 ERBB4Q15303 1308 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms