RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 CNPY2Q9Y2B0 182 aa5.49□□□□□ -1.53
VPS13C-201ENST00000249837 HMGN5P82970 282 aaKnown RBP5.49□□□□□ -1.53
VPS13C-201ENST00000249837 TTLL5Q6EMB2 1281 aa5.49□□□□□ -1.53
VPS13C-201ENST00000249837 GIMAP6Q6P9H5 292 aa5.49□□□□□ -1.53
VPS13C-201ENST00000249837 CCDC8Q9H0W5 538 aaPredicted RBP5.49□□□□□ -1.53
VPS13C-201ENST00000249837 ZBTB7BO15156 539 aaPredicted RBP5.49□□□□□ -1.53
VPS13C-201ENST00000249837 FLIIQ13045 1269 aa5.49□□□□□ -1.53
VPS13C-201ENST00000249837 CAMK4Q16566 473 aa5.49□□□□□ -1.53
VPS13C-201ENST00000249837 FOXO3O43524 673 aa5.49□□□□□ -1.53
VPS13C-201ENST00000249837 RAPGEF4Q8WZA2 1011 aa5.49□□□□□ -1.53
VPS13C-201ENST00000249837 KIF1BPQ96EK5 621 aa5.49□□□□□ -1.53
VPS13C-201ENST00000249837 A0A0U1RQG5 324 aaPredicted RBP5.48□□□□□ -1.53
VPS13C-201ENST00000249837 SYNE3Q6ZMZ3 975 aa5.48□□□□□ -1.53
VPS13C-201ENST00000249837 USP48Q86UV5 1035 aa5.48□□□□□ -1.53
VPS13C-201ENST00000249837 DCTPP1Q9H773 170 aa5.48□□□□□ -1.53
VPS13C-201ENST00000249837 TTC12Q9H892 705 aaPredicted RBP5.48□□□□□ -1.53
VPS13C-201ENST00000249837 GNAT3A8MTJ3 354 aa5.48□□□□□ -1.53
VPS13C-201ENST00000249837 PES1O00541 588 aaKnown RBP5.48□□□□□ -1.53
VPS13C-201ENST00000249837 CKAP2LQ8IYA6 745 aa5.48□□□□□ -1.53
VPS13C-201ENST00000249837 ZSCAN31Q96LW9 406 aaPredicted RBP5.48□□□□□ -1.53
VPS13C-201ENST00000249837 POLR1AO95602 1720 aaPredicted RBP5.48□□□□□ -1.53
VPS13C-201ENST00000249837 NPC1L1Q9UHC9 1359 aa5.48□□□□□ -1.53
VPS13C-201ENST00000249837 FAM177BA6PVY3 158 aa5.48□□□□□ -1.53
VPS13C-201ENST00000249837 GUCY1B3Q02153 619 aa5.48□□□□□ -1.53
VPS13C-201ENST00000249837 TRDNQ13061 729 aa5.48□□□□□ -1.53
VPS13C-201ENST00000249837 RBM33Q96EV2 1170 aaKnown RBP5.48□□□□□ -1.53
VPS13C-201ENST00000249837 TCEANC2Q96MN5 208 aa5.48□□□□□ -1.53
VPS13C-201ENST00000249837 A0A1W2PP64 1363 aa5.48□□□□□ -1.53
VPS13C-201ENST00000249837 RAB11FIP3O75154 756 aa5.48□□□□□ -1.53
VPS13C-201ENST00000249837 EVA1CP58658 441 aa5.48□□□□□ -1.53
VPS13C-201ENST00000249837 TRIM29Q14134 588 aa5.48□□□□□ -1.53
VPS13C-201ENST00000249837 RALYLQ86SE5 291 aaKnown RBP5.48□□□□□ -1.53
VPS13C-201ENST00000249837 CHMP4CQ96CF2 233 aa5.48□□□□□ -1.53
VPS13C-201ENST00000249837 ESYT1Q9BSJ8 1104 aa5.48□□□□□ -1.53
VPS13C-201ENST00000249837 AKAP17AQ02040 695 aaKnown RBP5.48□□□□□ -1.53
VPS13C-201ENST00000249837 OLFM4Q6UX06 510 aa5.48□□□□□ -1.53
VPS13C-201ENST00000249837 WDR7Q9Y4E6 1490 aa5.48□□□□□ -1.53
VPS13C-201ENST00000249837 CEP170Q5SW79 1584 aa5.48□□□□□ -1.53
VPS13C-201ENST00000249837 INSRP06213 1382 aa5.48□□□□□ -1.53
VPS13C-201ENST00000249837 HCLS1P14317 486 aaPredicted RBP5.48□□□□□ -1.53
VPS13C-201ENST00000249837 SPATA32Q96LK8 384 aa5.48□□□□□ -1.53
VPS13C-201ENST00000249837 GLRX3O76003 335 aaKnown RBP5.48□□□□□ -1.53
VPS13C-201ENST00000249837 CBX1P83916 185 aa5.48□□□□□ -1.53
VPS13C-201ENST00000249837 ATP8B2P98198 1209 aa5.48□□□□□ -1.53
VPS13C-201ENST00000249837 LRRFIP1Q32MZ4 808 aaKnown RBP5.48□□□□□ -1.53
VPS13C-201ENST00000249837 C17orf53Q8N3J3 647 aaPredicted RBP5.48□□□□□ -1.53
VPS13C-201ENST00000249837 BTBD11A6QL63 1104 aa5.47□□□□□ -1.53
VPS13C-201ENST00000249837 ADCY5O95622 1261 aa5.47□□□□□ -1.53
VPS13C-201ENST00000249837 CEP85Q6P2H3 762 aa5.47□□□□□ -1.53
VPS13C-201ENST00000249837 MPRIPQ6WCQ1 1025 aa5.47□□□□□ -1.53
VPS13C-201ENST00000249837 CCDC34Q96HJ3 373 aa5.47□□□□□ -1.53
VPS13C-201ENST00000249837 ZHX1Q9UKY1 873 aaPredicted RBP5.47□□□□□ -1.53
VPS13C-201ENST00000249837 PTPRTO14522 1441 aa5.47□□□□□ -1.53
VPS13C-201ENST00000249837 MNS1Q8NEH6 495 aa5.47□□□□□ -1.53
VPS13C-201ENST00000249837 ARHGEF5Q12774 1597 aa5.47□□□□□ -1.53
VPS13C-201ENST00000249837 HIP1O00291 1037 aa5.47□□□□□ -1.53
VPS13C-201ENST00000249837 USP19O94966 1318 aa5.47□□□□□ -1.53
VPS13C-201ENST00000249837 ABCC2Q92887 1545 aa5.47□□□□□ -1.53
VPS13C-201ENST00000249837 TRPM1Q7Z4N2 1603 aa5.47□□□□□ -1.53
VPS13C-201ENST00000249837 STX6O43752 255 aa5.47□□□□□ -1.53
VPS13C-201ENST00000249837 ME1P48163 572 aa5.47□□□□□ -1.53
VPS13C-201ENST00000249837 ESCO1Q5FWF5 840 aa5.47□□□□□ -1.53
VPS13C-201ENST00000249837 PTPRCP08575 1304 aa5.47□□□□□ -1.53
VPS13C-201ENST00000249837 EIF4A2Q14240 407 aaKnown RBP5.47□□□□□ -1.53
VPS13C-201ENST00000249837 PDCL3Q9H2J4 239 aa5.47□□□□□ -1.53
VPS13C-201ENST00000249837 CCT2P78371 535 aaKnown RBP5.47□□□□□ -1.53
VPS13C-201ENST00000249837 ANKRD1Q15327 319 aa5.47□□□□□ -1.53
VPS13C-201ENST00000249837 PDCL2Q8N4E4 241 aa5.47□□□□□ -1.53
VPS13C-201ENST00000249837 CCDC85AQ96PX6 553 aaPredicted RBP5.47□□□□□ -1.53
VPS13C-201ENST00000249837 ZMYND15Q9H091 742 aa5.47□□□□□ -1.53
VPS13C-201ENST00000249837 ZNF396Q96N95 335 aaPredicted RBP5.47□□□□□ -1.53
VPS13C-201ENST00000249837 PLA2R1Q13018 1463 aa5.47□□□□□ -1.53
VPS13C-201ENST00000249837 OFD1O75665 1012 aa5.47□□□□□ -1.53
VPS13C-201ENST00000249837 GTF2E1P29083 439 aaPredicted RBP5.47□□□□□ -1.53
VPS13C-201ENST00000249837 NAT10Q9H0A0 1025 aaKnown RBP5.47□□□□□ -1.53
VPS13C-201ENST00000249837 UGGT1Q9NYU2 1555 aa5.47□□□□□ -1.53
VPS13C-201ENST00000249837 MTERF4Q7Z6M4 381 aaKnown RBP5.46□□□□□ -1.53
VPS13C-201ENST00000249837 PI4KAP2A4QPH2 592 aa5.46□□□□□ -1.53
VPS13C-201ENST00000249837 PI4KAP1Q8N8J0 262 aa5.46□□□□□ -1.53
VPS13C-201ENST00000249837 LRSAM1Q6UWE0 723 aa5.46□□□□□ -1.53
VPS13C-201ENST00000249837 RHPN1Q8TCX5 695 aa5.46□□□□□ -1.53
VPS13C-201ENST00000249837 TNNT3P45378 269 aaPredicted RBP5.46□□□□□ -1.54
VPS13C-201ENST00000249837 GAS2L3Q86XJ1 694 aa5.46□□□□□ -1.54
VPS13C-201ENST00000249837 CCDC112Q8NEF3 446 aa5.46□□□□□ -1.54
VPS13C-201ENST00000249837 UBE2Q2Q8WVN8 375 aa5.46□□□□□ -1.54
VPS13C-201ENST00000249837 SAMD9LQ8IVG5 1584 aa5.46□□□□□ -1.54
VPS13C-201ENST00000249837 PCMTD1Q96MG8 357 aaPredicted RBP5.46□□□□□ -1.54
VPS13C-201ENST00000249837 TPM1P09493 284 aa5.46□□□□□ -1.54
VPS13C-201ENST00000249837 GOLGA6L1Q8N7Z2 621 aa5.46□□□□□ -1.54
VPS13C-201ENST00000249837 CD2BP2O95400 341 aaKnown RBP5.46□□□□□ -1.54
VPS13C-201ENST00000249837 FKBP4Q02790 459 aaKnown RBP eCLIP5.46□□□□□ -1.54
VPS13C-201ENST00000249837 FAM177A1Q8N128 213 aaPredicted RBP5.46□□□□□ -1.54
VPS13C-201ENST00000249837 MYD88Q99836 296 aa5.46□□□□□ -1.54
VPS13C-201ENST00000249837 LMBRD1Q9NUN5 540 aa5.46□□□□□ -1.54
VPS13C-201ENST00000249837 ZC3H6P61129 1189 aaKnown RBP5.46□□□□□ -1.54
VPS13C-201ENST00000249837 GADD45BO75293 160 aaPredicted RBP5.46□□□□□ -1.54
VPS13C-201ENST00000249837 DNAAF4Q8WXU2 420 aa5.46□□□□□ -1.54
VPS13C-201ENST00000249837 LRRC2Q9BYS8 371 aa5.46□□□□□ -1.54
VPS13C-201ENST00000249837 CEBPAP49715 358 aaPredicted RBP5.45□□□□□ -1.54
VPS13C-201ENST00000249837 SAFBQ15424 915 aaKnown RBP eCLIP5.45□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms