RNA–Protein interactions for RNA: ENST00000234420.9

MSH6-201, Transcript of mutS homolog 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH6, Length 7,476 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-201ENST00000234420 TRMT1Q9NXH9 659 aaKnown RBP12.92□□□□□ -0.34
MSH6-201ENST00000234420 CEP83Q9Y592 693 aa12.92□□□□□ -0.34
MSH6-201ENST00000234420 CCDC6Q16204 474 aa12.92□□□□□ -0.34
MSH6-201ENST00000234420 CNTROBQ8N137 903 aa12.92□□□□□ -0.34
MSH6-201ENST00000234420 PABPN1LA6NDY0 278 aaKnown RBP12.91□□□□□ -0.34
MSH6-201ENST00000234420 IGSF3O75054 1194 aa12.91□□□□□ -0.34
MSH6-201ENST00000234420 HSPA4P34932 840 aa12.91□□□□□ -0.34
MSH6-201ENST00000234420 DZIP1Q86YF9 867 aaKnown RBP12.91□□□□□ -0.34
MSH6-201ENST00000234420 IDH1O75874 414 aaKnown RBP12.91□□□□□ -0.34
MSH6-201ENST00000234420 DNA2P51530 1060 aa12.91□□□□□ -0.34
MSH6-201ENST00000234420 IGHMBP2P38935 993 aaKnown RBP12.91□□□□□ -0.34
MSH6-201ENST00000234420 NOP2P46087 812 aaKnown RBP12.91□□□□□ -0.34
MSH6-201ENST00000234420 SPOUT1Q5T280 376 aaKnown RBP12.91□□□□□ -0.34
MSH6-201ENST00000234420 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.91□□□□□ -0.342e-8■□□□□ 9.7
MSH6-201ENST00000234420 KIF4BQ2VIQ3 1234 aa12.91□□□□□ -0.34
MSH6-201ENST00000234420 PLEKHO1Q53GL0 409 aaPredicted RBP12.91□□□□□ -0.34
MSH6-201ENST00000234420 C10orf67Q8IYJ2 551 aa12.91□□□□□ -0.34
MSH6-201ENST00000234420 JPH4Q96JJ6 628 aa12.91□□□□□ -0.34
MSH6-201ENST00000234420 SURF6O75683 361 aaKnown RBP12.9□□□□□ -0.34
MSH6-201ENST00000234420 PSMA5P28066 241 aa12.9□□□□□ -0.34
MSH6-201ENST00000234420 MCM4P33991 863 aa12.9□□□□□ -0.34
MSH6-201ENST00000234420 FAM212AQ96EL1 285 aa12.9□□□□□ -0.34
MSH6-201ENST00000234420 NAA25Q14CX7 972 aa12.9□□□□□ -0.34
MSH6-201ENST00000234420 CCDC82Q8N4S0 544 aa12.9□□□□□ -0.34
MSH6-201ENST00000234420 PDCP20941 246 aa12.9□□□□□ -0.34
MSH6-201ENST00000234420 NINLQ9Y2I6 1382 aa12.9□□□□□ -0.34
MSH6-201ENST00000234420 FAM114A1Q8IWE2 563 aa12.9□□□□□ -0.35
MSH6-201ENST00000234420 BTBD11A6QL63 1104 aa12.89□□□□□ -0.35
MSH6-201ENST00000234420 RFC4P35249 363 aa12.89□□□□□ -0.35
MSH6-201ENST00000234420 UPF3BQ9BZI7 483 aaKnown RBP12.89□□□□□ -0.35
MSH6-201ENST00000234420 MYBBP1AQ9BQG0 1328 aaKnown RBP12.89□□□□□ -0.35
MSH6-201ENST00000234420 SEC63Q9UGP8 760 aaKnown RBP12.89□□□□□ -0.35
MSH6-201ENST00000234420 DACH1Q9UI36 760 aa12.89□□□□□ -0.35
MSH6-201ENST00000234420 EAPPQ56P03 285 aaPredicted RBP12.89□□□□□ -0.35
MSH6-201ENST00000234420 SPECC1LQ69YQ0 1117 aa12.89□□□□□ -0.35
MSH6-201ENST00000234420 GIGYF2Q6Y7W6 1299 aaKnown RBP12.89□□□□□ -0.35
MSH6-201ENST00000234420 CFAP100Q494V2 611 aa12.89□□□□□ -0.35
MSH6-201ENST00000234420 GSTTP1A0A1W2PQM5 241 aa12.88□□□□□ -0.35
MSH6-201ENST00000234420 SPTY2D1Q68D10 685 aaPredicted RBP12.88□□□□□ -0.35
MSH6-201ENST00000234420 OTUD6BQ8N6M0 293 aa12.88□□□□□ -0.35
MSH6-201ENST00000234420 CCDC150Q8NCX0 1101 aa12.88□□□□□ -0.35
MSH6-201ENST00000234420 PANK1Q8TE04 598 aa12.88□□□□□ -0.35
MSH6-201ENST00000234420 GCOM1H8Y6P7 765 aaPredicted RBP12.88□□□□□ -0.35
MSH6-201ENST00000234420 STK25O00506 426 aa12.88□□□□□ -0.35
MSH6-201ENST00000234420 DYNC1I1O14576 645 aa12.88□□□□□ -0.35
MSH6-201ENST00000234420 MYZAPP0CAP1 466 aa12.88□□□□□ -0.35
MSH6-201ENST00000234420 C6orf163Q5TEZ5 329 aa12.88□□□□□ -0.35
MSH6-201ENST00000234420 STIM1Q13586 685 aa12.88□□□□□ -0.35
MSH6-201ENST00000234420 HYPKQ9NX55 129 aa12.88□□□□□ -0.35
MSH6-201ENST00000234420 KIF2AO00139 706 aaPredicted RBP12.88□□□□□ -0.35
MSH6-201ENST00000234420 MCM3P25205 808 aa12.88□□□□□ -0.35
MSH6-201ENST00000234420 MIPOL1Q8TD10 442 aa12.88□□□□□ -0.35
MSH6-201ENST00000234420 KIF3CO14782 793 aa12.87□□□□□ -0.35
MSH6-201ENST00000234420 KIF5CO60282 957 aa12.87□□□□□ -0.35
MSH6-201ENST00000234420 SPG7Q9UQ90 795 aa12.87□□□□□ -0.35
MSH6-201ENST00000234420 GBP6Q6ZN66 633 aa12.87□□□□□ -0.35
MSH6-201ENST00000234420 CAMK4Q16566 473 aa12.87□□□□□ -0.35
MSH6-201ENST00000234420 CCDC178Q5BJE1 867 aa12.87□□□□□ -0.35
MSH6-201ENST00000234420 ZBTB9Q96C00 473 aa12.87□□□□□ -0.35
MSH6-201ENST00000234420 APAF1O14727 1248 aa12.87□□□□□ -0.35
MSH6-201ENST00000234420 SH3BP5O60239 455 aa12.87□□□□□ -0.35
MSH6-201ENST00000234420 NUP62CLQ9H1M0 184 aa12.87□□□□□ -0.35
MSH6-201ENST00000234420 GPTP24298 496 aa12.87□□□□□ -0.35
MSH6-201ENST00000234420 NOP9Q86U38 636 aaKnown RBP12.87□□□□□ -0.35
MSH6-201ENST00000234420 KRT222Q8N1A0 295 aa12.87□□□□□ -0.35
MSH6-201ENST00000234420 USHBP1Q8N6Y0 703 aa12.87□□□□□ -0.35
MSH6-201ENST00000234420 DNAI2Q9GZS0 605 aa12.87□□□□□ -0.35
MSH6-201ENST00000234420 SSX2IPQ9Y2D8 614 aa12.87□□□□□ -0.35
MSH6-201ENST00000234420 MSL1Q68DK7 614 aa12.86□□□□□ -0.35
MSH6-201ENST00000234420 VEZTQ9HBM0 779 aa12.86□□□□□ -0.35
MSH6-201ENST00000234420 EIF5P55010 431 aaKnown RBP12.86□□□□□ -0.35
MSH6-201ENST00000234420 PRKG1Q13976 671 aa12.86□□□□□ -0.35
MSH6-201ENST00000234420 TMOD3Q9NYL9 352 aa12.86□□□□□ -0.35
MSH6-201ENST00000234420 SFPQP23246 707 aaKnown RBP eCLIP12.86□□□□□ -0.35
MSH6-201ENST00000234420 KRT85P78386 507 aa12.86□□□□□ -0.35
MSH6-201ENST00000234420 KIF15Q9NS87 1388 aa12.86□□□□□ -0.35
MSH6-201ENST00000234420 MYO1BO43795 1136 aa12.86□□□□□ -0.35
MSH6-201ENST00000234420 FAM184BQ9ULE4 1060 aa12.86□□□□□ -0.35
MSH6-201ENST00000234420 FHAD1B1AJZ9 1412 aa12.86□□□□□ -0.35
MSH6-201ENST00000234420 SETSIPP0DME0 302 aa12.86□□□□□ -0.35
MSH6-201ENST00000234420 HLTFQ14527 1009 aaKnown RBP eCLIP12.86□□□□□ -0.352e-7■■■□□ 16.9
MSH6-201ENST00000234420 CEP57L1Q8IYX8 460 aa12.86□□□□□ -0.35
MSH6-201ENST00000234420 BICD1Q96G01 975 aa12.86□□□□□ -0.35
MSH6-201ENST00000234420 MIS18AQ9NYP9 233 aa12.86□□□□□ -0.35
MSH6-201ENST00000234420 MAATS1Q7Z4T9 603 aa12.85□□□□□ -0.35
MSH6-201ENST00000234420 CCDC144AA2RUR9 1427 aa12.85□□□□□ -0.35
MSH6-201ENST00000234420 ZSCAN12O43309 604 aa12.85□□□□□ -0.35
MSH6-201ENST00000234420 MCM2P49736 904 aa12.85□□□□□ -0.35
MSH6-201ENST00000234420 IVLP07476 585 aa12.85□□□□□ -0.35
MSH6-201ENST00000234420 TMCO4Q5TGY1 634 aa12.85□□□□□ -0.35
MSH6-201ENST00000234420 NACAP1Q9BZK3 213 aa12.85□□□□□ -0.35
MSH6-201ENST00000234420 AKNAD1Q5T1N1 836 aa12.85□□□□□ -0.35
MSH6-201ENST00000234420 UBAC1Q9BSL1 405 aa12.85□□□□□ -0.35
MSH6-201ENST00000234420 ZNF652Q9Y2D9 606 aa12.85□□□□□ -0.35
MSH6-201ENST00000234420 SETD5Q9C0A6 1442 aa12.85□□□□□ -0.35
MSH6-201ENST00000234420 METTL24Q5JXM2 366 aa12.85□□□□□ -0.35
MSH6-201ENST00000234420 WDR33Q9C0J8 1336 aaKnown RBP12.85□□□□□ -0.35
MSH6-201ENST00000234420 ABCC8Q09428 1581 aa12.84□□□□□ -0.35
MSH6-201ENST00000234420 K7ELQ4 463 aaPredicted RBP12.84□□□□□ -0.35
MSH6-201ENST00000234420 RFC1P35251 1148 aaPredicted RBP12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms