RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 CEP83Q9Y592 693 aa7.06□□□□□ -1.28
VPS13D-201ENST00000011700 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP7.06□□□□□ -1.282e-6■□□□□ 10.6
VPS13D-201ENST00000011700 PTPRGP23470 1445 aa7.06□□□□□ -1.28
VPS13D-201ENST00000011700 GRIN2BQ13224 1484 aa7.06□□□□□ -1.28
VPS13D-201ENST00000011700 CCDC94Q9BW85 323 aaPredicted RBP7.06□□□□□ -1.28
VPS13D-201ENST00000011700 SLTMQ9NWH9 1034 aaKnown RBP eCLIP7.06□□□□□ -1.28
VPS13D-201ENST00000011700 UPF3BQ9BZI7 483 aaKnown RBP7.05□□□□□ -1.28
VPS13D-201ENST00000011700 KDM5AP29375 1690 aaKnown RBP7.05□□□□□ -1.28
VPS13D-201ENST00000011700 RBM27Q9P2N5 1060 aaKnown RBP7.05□□□□□ -1.28
VPS13D-201ENST00000011700 ME1P48163 572 aa7.05□□□□□ -1.28
VPS13D-201ENST00000011700 TUBB2AQ13885 445 aa7.05□□□□□ -1.28
VPS13D-201ENST00000011700 SH2D4BQ5SQS7 431 aa7.05□□□□□ -1.28
VPS13D-201ENST00000011700 SOGA3Q5TF21 947 aa7.05□□□□□ -1.28
VPS13D-201ENST00000011700 TUBB2BQ9BVA1 445 aa7.05□□□□□ -1.28
VPS13D-201ENST00000011700 CNPY4Q8N129 248 aa7.05□□□□□ -1.28
VPS13D-201ENST00000011700 CFAP43Q8NDM7 1665 aa7.05□□□□□ -1.28
VPS13D-201ENST00000011700 HSP90AB3PQ58FF7 597 aa7.05□□□□□ -1.28
VPS13D-201ENST00000011700 DNAJC2Q99543 621 aaKnown RBP7.05□□□□□ -1.28
VPS13D-201ENST00000011700 RNF41Q9H4P4 317 aaPredicted RBP7.05□□□□□ -1.28
VPS13D-201ENST00000011700 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.05□□□□□ -1.28
VPS13D-201ENST00000011700 SEC63Q9UGP8 760 aaKnown RBP7.05□□□□□ -1.28
VPS13D-201ENST00000011700 CCDC9Q9Y3X0 531 aaKnown RBP7.05□□□□□ -1.28
VPS13D-201ENST00000011700 MICAL3Q7RTP6 2002 aa7.05□□□□□ -1.28
VPS13D-201ENST00000011700 HDAC9Q9UKV0 1011 aa7.05□□□□□ -1.28
VPS13D-201ENST00000011700 CFAP74Q9C0B2 1584 aa7.05□□□□□ -1.28
VPS13D-201ENST00000011700 FSD2A1L4K1 749 aa7.05□□□□□ -1.28
VPS13D-201ENST00000011700 CCDC69A6NI79 296 aa7.05□□□□□ -1.28
VPS13D-201ENST00000011700 PLEKHO1Q53GL0 409 aaPredicted RBP7.05□□□□□ -1.28
VPS13D-201ENST00000011700 SEPT6Q14141 434 aa7.04□□□□□ -1.28
VPS13D-201ENST00000011700 PTPN14Q15678 1187 aa7.04□□□□□ -1.28
VPS13D-201ENST00000011700 CCDC183Q5T5S1 534 aa7.04□□□□□ -1.28
VPS13D-201ENST00000011700 CCDC102AQ96A19 550 aa7.04□□□□□ -1.28
VPS13D-201ENST00000011700 CLIP2Q9UDT6 1046 aa7.04□□□□□ -1.28
VPS13D-201ENST00000011700 FGD5Q6ZNL6 1462 aa7.04□□□□□ -1.28
VPS13D-201ENST00000011700 ATP2A1O14983 1001 aa7.04□□□□□ -1.28
VPS13D-201ENST00000011700 KIF3CO14782 793 aa7.04□□□□□ -1.28
VPS13D-201ENST00000011700 USP5P45974 858 aa7.04□□□□□ -1.28
VPS13D-201ENST00000011700 CCDC6Q16204 474 aa7.04□□□□□ -1.28
VPS13D-201ENST00000011700 TMEM266Q2M3C6 531 aa7.04□□□□□ -1.28
VPS13D-201ENST00000011700 CCDC50Q8IVM0 306 aa7.04□□□□□ -1.28
VPS13D-201ENST00000011700 WDR78Q5VTH9 848 aa7.04□□□□□ -1.28
VPS13D-201ENST00000011700 NUP62CLQ9H1M0 184 aa7.04□□□□□ -1.28
VPS13D-201ENST00000011700 IKBKGQ9Y6K9 419 aa7.04□□□□□ -1.28
VPS13D-201ENST00000011700 TSNARE1Q96NA8 513 aa7.04□□□□□ -1.28
VPS13D-201ENST00000011700 ZNF652Q9Y2D9 606 aa7.04□□□□□ -1.28
VPS13D-201ENST00000011700 A0A087WZG4 1122 aa7.04□□□□□ -1.28
VPS13D-201ENST00000011700 ESPNB1AK53 854 aa7.04□□□□□ -1.28
VPS13D-201ENST00000011700 RIC3Q7Z5B4 369 aa7.04□□□□□ -1.28
VPS13D-201ENST00000011700 FSD1Q9BTV5 496 aa7.04□□□□□ -1.28
VPS13D-201ENST00000011700 HMG20BQ9P0W2 317 aa7.04□□□□□ -1.28
VPS13D-201ENST00000011700 PIP4K2BP78356 416 aa7.04□□□□□ -1.28
VPS13D-201ENST00000011700 UVSSAQ2YD98 709 aa7.04□□□□□ -1.28
VPS13D-201ENST00000011700 PAXIP1Q6ZW49 1069 aaPredicted RBP7.04□□□□□ -1.28
VPS13D-201ENST00000011700 TSPYL4Q9UJ04 414 aa7.04□□□□□ -1.28
VPS13D-201ENST00000011700 RASAL2Q9UJF2 1139 aa7.04□□□□□ -1.28
VPS13D-201ENST00000011700 SSFA2P28290 1259 aa7.03□□□□□ -1.28
VPS13D-201ENST00000011700 WASHC4Q2M389 1173 aa7.03□□□□□ -1.28
VPS13D-201ENST00000011700 SPATA32Q96LK8 384 aa7.03□□□□□ -1.28
VPS13D-201ENST00000011700 PRPF40AO75400 957 aaKnown RBP7.03□□□□□ -1.28
VPS13D-201ENST00000011700 NEBLO76041 1014 aa7.03□□□□□ -1.28
VPS13D-201ENST00000011700 PPP1R2P41236 205 aa7.03□□□□□ -1.28
VPS13D-201ENST00000011700 ALDH1L2Q3SY69 923 aa7.03□□□□□ -1.28
VPS13D-201ENST00000011700 ATL3Q6DD88 541 aa7.03□□□□□ -1.28
VPS13D-201ENST00000011700 ZSCAN16Q9H4T2 348 aaPredicted RBP7.03□□□□□ -1.28
VPS13D-201ENST00000011700 RMND1Q9NWS8 449 aa7.03□□□□□ -1.28
VPS13D-201ENST00000011700 MKRN1Q9UHC7 482 aaKnown RBP7.03□□□□□ -1.28
VPS13D-201ENST00000011700 ACTN2P35609 894 aa7.03□□□□□ -1.28
VPS13D-201ENST00000011700 GRPEL1Q9HAV7 217 aa7.03□□□□□ -1.28
VPS13D-201ENST00000011700 SSR1P43307 286 aaKnown RBP7.03□□□□□ -1.28
VPS13D-201ENST00000011700 IQCDQ96DY2 449 aa7.03□□□□□ -1.28
VPS13D-201ENST00000011700 PABPN1LA6NDY0 278 aaKnown RBP7.03□□□□□ -1.28
VPS13D-201ENST00000011700 ATF3P18847 181 aa7.03□□□□□ -1.28
VPS13D-201ENST00000011700 CEP112Q8N8E3 955 aa7.03□□□□□ -1.28
VPS13D-201ENST00000011700 KIAA1107Q9UPP5 1409 aa7.03□□□□□ -1.28
VPS13D-201ENST00000011700 BIVM-ERCC5R4GMW8 1640 aa7.03□□□□□ -1.28
VPS13D-201ENST00000011700 HSPA4P34932 840 aa7.03□□□□□ -1.28
VPS13D-201ENST00000011700 DDX23Q9BUQ8 820 aaKnown RBP7.03□□□□□ -1.28
VPS13D-201ENST00000011700 DDX19AQ9NUU7 478 aaKnown RBP7.03□□□□□ -1.28
VPS13D-201ENST00000011700 ATP5DP30049 168 aa7.02□□□□□ -1.28
VPS13D-201ENST00000011700 TMEM132AQ24JP5 1023 aa7.02□□□□□ -1.28
VPS13D-201ENST00000011700 ATF7IPQ6VMQ6 1270 aa7.02□□□□□ -1.28
VPS13D-201ENST00000011700 DAAM2Q86T65 1068 aa7.02□□□□□ -1.28
VPS13D-201ENST00000011700 CERS3Q8IU89 383 aa7.02□□□□□ -1.28
VPS13D-201ENST00000011700 RPAP2Q8IXW5 612 aaPredicted RBP7.02□□□□□ -1.28
VPS13D-201ENST00000011700 BLOC1S2Q6QNY1 142 aa7.02□□□□□ -1.29
VPS13D-201ENST00000011700 ALDH3A1P30838 453 aa7.02□□□□□ -1.29
VPS13D-201ENST00000011700 SLU7O95391 586 aaKnown RBP7.02□□□□□ -1.29
VPS13D-201ENST00000011700 UBAC1Q9BSL1 405 aa7.02□□□□□ -1.29
VPS13D-201ENST00000011700 LRRFIP2Q9Y608 721 aaKnown RBP7.02□□□□□ -1.29
VPS13D-201ENST00000011700 KIF5BP33176 963 aa7.02□□□□□ -1.29
VPS13D-201ENST00000011700 NEK4P51957 841 aa7.02□□□□□ -1.29
VPS13D-201ENST00000011700 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.02□□□□□ -1.29
VPS13D-201ENST00000011700 ARID3AQ99856 593 aa7.02□□□□□ -1.29
VPS13D-201ENST00000011700 YEATS4O95619 227 aa7.02□□□□□ -1.29
VPS13D-201ENST00000011700 SOS1Q07889 1333 aaPredicted RBP7.02□□□□□ -1.29
VPS13D-201ENST00000011700 SPAG1Q07617 926 aa7.02□□□□□ -1.29
VPS13D-201ENST00000011700 LARP1BQ659C4 914 aaKnown RBP7.02□□□□□ -1.29
VPS13D-201ENST00000011700 WDR66Q8TBY9 1149 aa7.02□□□□□ -1.29
VPS13D-201ENST00000011700 NAP1L3Q99457 506 aaPredicted RBP7.02□□□□□ -1.29
VPS13D-201ENST00000011700 DMRT2Q9Y5R5 561 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms