Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 KRT16P5-201ENST00000455284 522 ntBASIC18.18■□□□□ 0.5
LSM1O15116 EMC9-206ENST00000560403 872 ntTSL 2 BASIC18.18■□□□□ 0.5
LSM1O15116 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC18.18■□□□□ 0.5
LSM1O15116 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC18.18■□□□□ 0.5
LSM1O15116 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
LSM1O15116 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC18.18■□□□□ 0.5
LSM1O15116 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
LSM1O15116 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LSM1O15116 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
LSM1O15116 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LSM1O15116 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC18.18■□□□□ 0.5
LSM1O15116 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
LSM1O15116 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
LSM1O15116 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LSM1O15116 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
LSM1O15116 AL354751.1-201ENST00000412768 1863 ntBASIC18.18■□□□□ 0.5
LSM1O15116 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC18.18■□□□□ 0.5
LSM1O15116 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LSM1O15116 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
LSM1O15116 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
LSM1O15116 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC18.17■□□□□ 0.5
LSM1O15116 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LSM1O15116 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
LSM1O15116 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC18.17■□□□□ 0.5
LSM1O15116 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LSM1O15116 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
LSM1O15116 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
LSM1O15116 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC18.17■□□□□ 0.5
LSM1O15116 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC18.17■□□□□ 0.5
LSM1O15116 KRASP1-201ENST00000407852 552 ntBASIC18.17■□□□□ 0.5
LSM1O15116 SERF2-207ENST00000409614 582 ntTSL 2 BASIC18.17■□□□□ 0.5
LSM1O15116 AC239809.2-201ENST00000415381 517 ntBASIC18.17■□□□□ 0.5
LSM1O15116 POU5F1P3-201ENST00000428824 1078 ntBASIC18.17■□□□□ 0.5
LSM1O15116 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
LSM1O15116 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
LSM1O15116 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC18.17■□□□□ 0.5
LSM1O15116 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
LSM1O15116 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LSM1O15116 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC18.17■□□□□ 0.5
LSM1O15116 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC18.17■□□□□ 0.5
LSM1O15116 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
LSM1O15116 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LSM1O15116 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
LSM1O15116 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC18.16■□□□□ 0.5
LSM1O15116 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC18.16■□□□□ 0.5
LSM1O15116 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC18.16■□□□□ 0.5
LSM1O15116 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LSM1O15116 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC18.16■□□□□ 0.5
LSM1O15116 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
LSM1O15116 HEIH-201ENST00000623091 1652 ntBASIC18.16■□□□□ 0.5
LSM1O15116 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC18.16■□□□□ 0.5
LSM1O15116 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
LSM1O15116 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
LSM1O15116 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
LSM1O15116 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC18.16■□□□□ 0.5
LSM1O15116 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC18.16■□□□□ 0.5
LSM1O15116 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LSM1O15116 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
LSM1O15116 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC18.16■□□□□ 0.5
LSM1O15116 LY6E-205ENST00000519611 635 ntTSL 3 BASIC18.16■□□□□ 0.5
LSM1O15116 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC18.16■□□□□ 0.5
LSM1O15116 MMAB-206ENST00000540016 945 ntTSL 3 BASIC18.16■□□□□ 0.5
LSM1O15116 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
LSM1O15116 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC18.16■□□□□ 0.5
LSM1O15116 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
LSM1O15116 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LSM1O15116 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
LSM1O15116 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
LSM1O15116 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
LSM1O15116 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC18.16■□□□□ 0.5
LSM1O15116 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
LSM1O15116 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LSM1O15116 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LSM1O15116 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
LSM1O15116 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC18.16■□□□□ 0.5
LSM1O15116 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LSM1O15116 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC18.16■□□□□ 0.5
LSM1O15116 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC18.16■□□□□ 0.5
LSM1O15116 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LSM1O15116 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
LSM1O15116 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LSM1O15116 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LSM1O15116 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LSM1O15116 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC18.15■□□□□ 0.5
LSM1O15116 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LSM1O15116 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
LSM1O15116 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
LSM1O15116 ID1-201ENST00000376105 1233 ntBASIC18.15■□□□□ 0.5
LSM1O15116 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
LSM1O15116 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC18.15■□□□□ 0.5
LSM1O15116 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC18.15■□□□□ 0.5
LSM1O15116 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC18.15■□□□□ 0.5
LSM1O15116 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC18.15■□□□□ 0.5
LSM1O15116 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC18.15■□□□□ 0.5
LSM1O15116 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC18.15■□□□□ 0.5
LSM1O15116 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
LSM1O15116 RCC2P6-201ENST00000526625 1557 ntBASIC18.15■□□□□ 0.5
LSM1O15116 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LSM1O15116 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
LSM1O15116 AL139384.1-201ENST00000612143 3047 ntBASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 96 ms