Protein–RNA interactions for Protein: P31277

HOXD11, Homeobox protein Hox-D11, humanhuman

Predicted RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD11P31277 AC079600.2-201ENST00000550076 130 ntBASIC3.17□□□□□ -1.9
HOXD11P31277 MIR4648-201ENST00000580107 72 ntBASIC3.17□□□□□ -1.9
HOXD11P31277 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.17□□□□□ -1.9
HOXD11P31277 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
HOXD11P31277 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
HOXD11P31277 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
HOXD11P31277 Y_RNA.69-201ENST00000362885 109 ntBASIC3.16□□□□□ -1.9
HOXD11P31277 SNORD23.1-201ENST00000408212 104 ntBASIC3.16□□□□□ -1.9
HOXD11P31277 MIR4473-201ENST00000583731 91 ntBASIC3.16□□□□□ -1.9
HOXD11P31277 AC243829.3-201ENST00000622177 108 ntBASIC3.16□□□□□ -1.9
HOXD11P31277 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC3.15□□□□□ -1.91
HOXD11P31277 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.15□□□□□ -1.91
HOXD11P31277 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
HOXD11P31277 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.15□□□□□ -1.91
HOXD11P31277 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC3.14□□□□□ -1.91
HOXD11P31277 SNORD18A-201ENST00000363753 72 ntBASIC3.14□□□□□ -1.91
HOXD11P31277 RNA5SP325-201ENST00000363756 130 ntBASIC3.14□□□□□ -1.91
HOXD11P31277 RNU6-742P-201ENST00000365289 107 ntBASIC3.14□□□□□ -1.91
HOXD11P31277 RNU6-458P-201ENST00000384179 107 ntBASIC3.14□□□□□ -1.91
HOXD11P31277 SNORD109B-201ENST00000458961 67 ntBASIC3.14□□□□□ -1.91
HOXD11P31277 SNORD109A-201ENST00000459128 67 ntBASIC3.14□□□□□ -1.91
HOXD11P31277 SNORA64.4-201ENST00000516632 81 ntBASIC3.14□□□□□ -1.91
HOXD11P31277 U6.58-201ENST00000613107 107 ntBASIC3.14□□□□□ -1.91
HOXD11P31277 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
HOXD11P31277 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
HOXD11P31277 VTRNA1-1-201ENST00000363120 99 ntBASIC3.13□□□□□ -1.91
HOXD11P31277 MIR512-1-201ENST00000384913 84 ntBASIC3.13□□□□□ -1.91
HOXD11P31277 MIR30A-201ENST00000385092 71 ntBASIC3.13□□□□□ -1.91
HOXD11P31277 RNU6-910P-201ENST00000390844 107 ntBASIC3.13□□□□□ -1.91
HOXD11P31277 RNA5SP492-201ENST00000411330 114 ntBASIC3.13□□□□□ -1.91
HOXD11P31277 RNA5SP480-201ENST00000516840 109 ntBASIC3.13□□□□□ -1.91
HOXD11P31277 AC107016.2-201ENST00000547968 190 ntBASIC3.13□□□□□ -1.91
HOXD11P31277 MIR548AG1-201ENST00000579932 66 ntBASIC3.13□□□□□ -1.91
HOXD11P31277 MIR548AE1-201ENST00000583292 70 ntBASIC3.13□□□□□ -1.91
HOXD11P31277 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
HOXD11P31277 SNORD56.3-201ENST00000363507 71 ntBASIC3.12□□□□□ -1.91
HOXD11P31277 RNU7-151P-201ENST00000516930 53 ntBASIC3.12□□□□□ -1.91
HOXD11P31277 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC3.12□□□□□ -1.91
HOXD11P31277 MIR622-201ENST00000638396 96 ntBASIC3.12□□□□□ -1.91
HOXD11P31277 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3.12□□□□□ -1.91
HOXD11P31277 AL451105.1-201ENST00000450005 189 ntBASIC3.11□□□□□ -1.91
HOXD11P31277 RNU7-154P-201ENST00000516194 62 ntBASIC3.11□□□□□ -1.91
HOXD11P31277 Y_RNA.374-201ENST00000365606 101 ntBASIC3.1□□□□□ -1.91
HOXD11P31277 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
HOXD11P31277 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
HOXD11P31277 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
HOXD11P31277 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC3.09□□□□□ -1.91
HOXD11P31277 RNU6-828P-201ENST00000364876 107 ntBASIC3.09□□□□□ -1.91
HOXD11P31277 RNA5SP425-201ENST00000410336 112 ntBASIC3.09□□□□□ -1.91
HOXD11P31277 AC006210.1-201ENST00000424882 111 ntBASIC3.09□□□□□ -1.91
HOXD11P31277 AC026333.2-201ENST00000542164 106 ntBASIC3.09□□□□□ -1.91
HOXD11P31277 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.92
HOXD11P31277 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.92
HOXD11P31277 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.08□□□□□ -1.92
HOXD11P31277 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
HOXD11P31277 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
HOXD11P31277 MIR524-201ENST00000385242 87 ntBASIC3.08□□□□□ -1.92
HOXD11P31277 MIR5194-201ENST00000582634 120 ntBASIC3.08□□□□□ -1.92
HOXD11P31277 MIR8070-201ENST00000616510 88 ntBASIC3.08□□□□□ -1.92
HOXD11P31277 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.07□□□□□ -1.92
HOXD11P31277 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
HOXD11P31277 RNA5SP68-201ENST00000363885 119 ntBASIC3.07□□□□□ -1.92
HOXD11P31277 SUMO1P4-201ENST00000429430 302 ntBASIC3.07□□□□□ -1.92
HOXD11P31277 AC087499.2-201ENST00000432861 149 ntBASIC3.07□□□□□ -1.92
HOXD11P31277 AL162376.1-201ENST00000624117 175 ntBASIC3.07□□□□□ -1.92
HOXD11P31277 MIR6733-201ENST00000635723 61 ntBASIC3.07□□□□□ -1.92
HOXD11P31277 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.06□□□□□ -1.92
HOXD11P31277 RNU6-995P-201ENST00000391244 107 ntBASIC3.06□□□□□ -1.92
HOXD11P31277 SNORD79.1-201ENST00000516069 84 ntBASIC3.06□□□□□ -1.92
HOXD11P31277 SCARNA16.5-201ENST00000517114 183 ntBASIC3.06□□□□□ -1.92
HOXD11P31277 TP73-AS1.1-201ENST00000611447 161 ntBASIC3.06□□□□□ -1.92
HOXD11P31277 AC245884.12-201ENST00000615364 59 ntBASIC3.06□□□□□ -1.92
HOXD11P31277 AC138207.3-201ENST00000585289 166 ntBASIC3.05□□□□□ -1.92
HOXD11P31277 MIR6817-201ENST00000615588 66 ntBASIC3.05□□□□□ -1.92
HOXD11P31277 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.05□□□□□ -1.92
HOXD11P31277 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
HOXD11P31277 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.04□□□□□ -1.92
HOXD11P31277 SNORD115-25-201ENST00000362619 82 ntBASIC3.04□□□□□ -1.92
HOXD11P31277 RNU6-945P-201ENST00000383947 107 ntBASIC3.04□□□□□ -1.92
HOXD11P31277 MIR221-201ENST00000385135 110 ntBASIC3.04□□□□□ -1.92
HOXD11P31277 SNORD110-201ENST00000408189 75 ntBASIC3.04□□□□□ -1.92
HOXD11P31277 UQCRHP3-201ENST00000451503 251 ntBASIC3.04□□□□□ -1.92
HOXD11P31277 RN7SL75P-201ENST00000461926 281 ntBASIC3.04□□□□□ -1.92
HOXD11P31277 RNU1-92P-201ENST00000517017 135 ntBASIC3.04□□□□□ -1.92
HOXD11P31277 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
HOXD11P31277 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.04□□□□□ -1.92
HOXD11P31277 SNORD45.2-201ENST00000363552 72 ntBASIC3.03□□□□□ -1.92
HOXD11P31277 HMGN1P18-201ENST00000457642 277 ntBASIC3.03□□□□□ -1.92
HOXD11P31277 MIR3678-201ENST00000578455 94 ntBASIC3.03□□□□□ -1.92
HOXD11P31277 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
HOXD11P31277 SNORD114-1-201ENST00000362705 72 ntBASIC3.02□□□□□ -1.93
HOXD11P31277 Y_RNA.178-201ENST00000363832 102 ntBASIC3.02□□□□□ -1.93
HOXD11P31277 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC3.02□□□□□ -1.93
HOXD11P31277 RNA5SP470-201ENST00000516463 106 ntBASIC3.02□□□□□ -1.93
HOXD11P31277 RNU6-851P-201ENST00000384565 107 ntBASIC3.01□□□□□ -1.93
HOXD11P31277 RN7SKP223-201ENST00000410582 62 ntBASIC3.01□□□□□ -1.93
HOXD11P31277 U7.7-201ENST00000459276 60 ntBASIC3.01□□□□□ -1.93
HOXD11P31277 AC093010.3-201ENST00000570269 15214 ntBASIC3.01□□□□□ -1.93
HOXD11P31277 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.01□□□□□ -1.93
HOXD11P31277 RNU6-859P-201ENST00000362728 107 ntBASIC3□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 214.2 ms