Protein–RNA interactions for Protein: P53618

COPB1, Coatomer subunit beta, humanhuman

Known RBP Predictions only

Length 953 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1P53618 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COPB1P53618 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
COPB1P53618 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COPB1P53618 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COPB1P53618 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
COPB1P53618 KRT17P3-201ENST00000420566 1262 ntBASIC20.67■□□□□ 0.9
COPB1P53618 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC20.67■□□□□ 0.9
COPB1P53618 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COPB1P53618 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC20.67■□□□□ 0.9
COPB1P53618 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
COPB1P53618 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC20.67■□□□□ 0.9
COPB1P53618 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
COPB1P53618 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
COPB1P53618 MTMR9LP-203ENST00000426597 1545 ntBASIC20.67■□□□□ 0.9
COPB1P53618 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COPB1P53618 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
COPB1P53618 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COPB1P53618 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COPB1P53618 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COPB1P53618 NFYC-AS1-201ENST00000606277 1687 ntBASIC20.67■□□□□ 0.9
COPB1P53618 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC20.67■□□□□ 0.9
COPB1P53618 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COPB1P53618 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COPB1P53618 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COPB1P53618 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COPB1P53618 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC20.66■□□□□ 0.9
COPB1P53618 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC20.66■□□□□ 0.9
COPB1P53618 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
COPB1P53618 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COPB1P53618 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COPB1P53618 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COPB1P53618 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC20.66■□□□□ 0.9
COPB1P53618 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC20.66■□□□□ 0.9
COPB1P53618 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC20.66■□□□□ 0.9
COPB1P53618 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC20.66■□□□□ 0.9
COPB1P53618 RNA5SP413-201ENST00000516373 109 ntBASIC20.66■□□□□ 0.9
COPB1P53618 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COPB1P53618 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC20.66■□□□□ 0.9
COPB1P53618 AL023875.1-201ENST00000640777 796 ntBASIC20.66■□□□□ 0.9
COPB1P53618 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC20.66■□□□□ 0.9
COPB1P53618 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
COPB1P53618 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
COPB1P53618 KATNBL1P6-202ENST00000562413 1466 ntBASIC20.66■□□□□ 0.9
COPB1P53618 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC20.66■□□□□ 0.9
COPB1P53618 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COPB1P53618 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COPB1P53618 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COPB1P53618 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
COPB1P53618 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COPB1P53618 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COPB1P53618 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COPB1P53618 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC20.66■□□□□ 0.9
COPB1P53618 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COPB1P53618 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
COPB1P53618 AR-207ENST00000612010 3896 ntTSL 5 BASIC20.66■□□□□ 0.9
COPB1P53618 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC20.65■□□□□ 0.9
COPB1P53618 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC20.65■□□□□ 0.9
COPB1P53618 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COPB1P53618 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
COPB1P53618 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC20.65■□□□□ 0.9
COPB1P53618 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COPB1P53618 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC20.65■□□□□ 0.9
COPB1P53618 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC20.65■□□□□ 0.9
COPB1P53618 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COPB1P53618 KRASP1-201ENST00000407852 552 ntBASIC20.65■□□□□ 0.9
COPB1P53618 APTR-205ENST00000447009 902 ntTSL 2 BASIC20.65■□□□□ 0.9
COPB1P53618 AC026366.1-201ENST00000488803 879 ntBASIC20.65■□□□□ 0.9
COPB1P53618 GLRB-205ENST00000512619 728 ntTSL 3 BASIC20.65■□□□□ 0.9
COPB1P53618 AC068587.9-201ENST00000641814 219 ntBASIC20.65■□□□□ 0.9
COPB1P53618 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COPB1P53618 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COPB1P53618 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
COPB1P53618 AL499627.1-201ENST00000569373 2188 ntBASIC20.65■□□□□ 0.9
COPB1P53618 ABALON-201ENST00000629058 1903 ntBASIC20.65■□□□□ 0.9
COPB1P53618 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
COPB1P53618 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.9
COPB1P53618 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC20.64■□□□□ 0.9
COPB1P53618 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC20.64■□□□□ 0.9
COPB1P53618 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
COPB1P53618 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
COPB1P53618 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.9
COPB1P53618 KRT8P11-201ENST00000409686 1436 ntBASIC20.64■□□□□ 0.89
COPB1P53618 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
COPB1P53618 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
COPB1P53618 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
COPB1P53618 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
COPB1P53618 HLA-L-209ENST00000420110 1011 ntBASIC20.64■□□□□ 0.89
COPB1P53618 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC20.64■□□□□ 0.89
COPB1P53618 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
COPB1P53618 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
COPB1P53618 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
COPB1P53618 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
COPB1P53618 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
COPB1P53618 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC20.64■□□□□ 0.89
COPB1P53618 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
COPB1P53618 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC20.64■□□□□ 0.89
COPB1P53618 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC20.64■□□□□ 0.89
COPB1P53618 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
COPB1P53618 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
COPB1P53618 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 76.5 ms