RNA–Protein interactions for RNA: ENST00000566347.5

CLN6-207, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 1 (best) BASIC

Gene CLN6, Length 981 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-207ENST00000566347 NISCHQ9Y2I1 1504 aa50.06■■■■■ 5.6
CLN6-207ENST00000566347 CCDC180Q9P1Z9 1646 aa44.83■■■■■ 4.77
CLN6-207ENST00000566347 ABCC9O60706 1549 aa44.44■■■■■ 4.7
CLN6-207ENST00000566347 RB1CC1Q8TDY2 1594 aa42.51■■■■■ 4.4
CLN6-207ENST00000566347 NACADO15069 1562 aa42.31■■■■■ 4.36
CLN6-207ENST00000566347 DCAF8L2P0C7V8 631 aa42.07■■■■■ 4.33
CLN6-207ENST00000566347 MYO15BQ96JP2 1530 aa41.85■■■■■ 4.29
CLN6-207ENST00000566347 ZCCHC6Q5VYS8 1495 aaKnown RBP41.56■■■■■ 4.24
CLN6-207ENST00000566347 UNC13AQ9UPW8 1703 aa41.5■■■■■ 4.23
CLN6-207ENST00000566347 DCAF1Q9Y4B6 1507 aa41.42■■■■■ 4.22
CLN6-207ENST00000566347 PABPN1Q86U42 306 aaKnown RBP eCLIP41.4■■■■■ 4.22
CLN6-207ENST00000566347 DNAJC5BQ9UF47 199 aa41.35■■■■■ 4.21
CLN6-207ENST00000566347 BICRAQ9NZM4 1560 aa41.2■■■■■ 4.19
CLN6-207ENST00000566347 SCRIBQ14160 1630 aa40.81■■■■■ 4.12
CLN6-207ENST00000566347 SHROOM4Q9ULL8 1493 aa40.8■■■■■ 4.12
CLN6-207ENST00000566347 EIF4G1Q04637 1599 aaKnown RBP40.19■■■■■ 4.02
CLN6-207ENST00000566347 CC2D2AQ9P2K1 1620 aa40.19■■■■■ 4.02
CLN6-207ENST00000566347 CECR2Q9BXF3 1484 aa40.03■■■■■ 4
CLN6-207ENST00000566347 NCAPD3P42695 1498 aa39.03■■■■□ 3.84
CLN6-207ENST00000566347 SMARCA4P51532 1647 aa38.99■■■■□ 3.83
CLN6-207ENST00000566347 ATAD2BQ9ULI0 1458 aa38.94■■■■□ 3.82
CLN6-207ENST00000566347 SMARCA2P51531 1590 aa38.9■■■■□ 3.82
CLN6-207ENST00000566347 BAZ1AQ9NRL2 1556 aaPredicted RBP38.87■■■■□ 3.81
CLN6-207ENST00000566347 HMGXB3Q12766 1538 aa38.79■■■■□ 3.8
CLN6-207ENST00000566347 PEG3Q9GZU2 1588 aa38.63■■■■□ 3.77
CLN6-207ENST00000566347 BAZ1BQ9UIG0 1483 aaKnown RBP38.6■■■■□ 3.77
CLN6-207ENST00000566347 MROH2BQ7Z745 1585 aa38.54■■■■□ 3.76
CLN6-207ENST00000566347 ERCC6Q03468 1493 aa38.4■■■■□ 3.74
CLN6-207ENST00000566347 NESP48681 1621 aa38.25■■■■□ 3.71
CLN6-207ENST00000566347 CUX2O14529 1486 aa38.24■■■■□ 3.71
CLN6-207ENST00000566347 LAMC3Q9Y6N6 1575 aa38.12■■■■□ 3.69
CLN6-207ENST00000566347 WIZO95785 1651 aa38.1■■■■□ 3.69
CLN6-207ENST00000566347 PDS5BQ9NTI5 1447 aa37.89■■■■□ 3.66
CLN6-207ENST00000566347 RSF1Q96T23 1441 aaPredicted RBP37.87■■■■□ 3.65
CLN6-207ENST00000566347 CADPSQ9ULU8 1353 aa37.85■■■■□ 3.65
CLN6-207ENST00000566347 THOC2Q8NI27 1593 aaKnown RBP37.85■■■■□ 3.65
CLN6-207ENST00000566347 DNAJC5Q9H3Z4 198 aa37.81■■■■□ 3.64
CLN6-207ENST00000566347 KIF21AQ7Z4S6 1674 aa37.8■■■■□ 3.64
CLN6-207ENST00000566347 TOP2AP11388 1531 aaKnown RBP37.68■■■■□ 3.62
CLN6-207ENST00000566347 MRC2Q9UBG0 1479 aa37.52■■■■□ 3.6
CLN6-207ENST00000566347 CFTRP13569 1480 aa37.5■■■■□ 3.59
CLN6-207ENST00000566347 CEP164Q9UPV0 1460 aa37.45■■■■□ 3.59
CLN6-207ENST00000566347 WDR62O43379 1518 aa37.42■■■■□ 3.58
CLN6-207ENST00000566347 FANCD2Q9BXW9 1451 aa37.42■■■■□ 3.58
CLN6-207ENST00000566347 CCDC88BA6NC98 1476 aa37.22■■■■□ 3.55
CLN6-207ENST00000566347 PRDM2Q13029 1718 aa37.17■■■■□ 3.54
CLN6-207ENST00000566347 URB2Q14146 1524 aaKnown RBP37.07■■■■□ 3.53
CLN6-207ENST00000566347 TOPBP1Q92547 1522 aa36.75■■■■□ 3.47
CLN6-207ENST00000566347 ABCC8Q09428 1581 aa36.74■■■■□ 3.47
CLN6-207ENST00000566347 IFT140Q96RY7 1462 aa36.69■■■■□ 3.46
CLN6-207ENST00000566347 DNMBPQ6XZF7 1577 aa36.66■■■■□ 3.46
CLN6-207ENST00000566347 ZNF608Q9ULD9 1512 aaPredicted RBP36.54■■■■□ 3.44
CLN6-207ENST00000566347 OSCARQ8IYS5 282 aa36.53■■■■□ 3.44
CLN6-207ENST00000566347 SUPT5HO00267 1087 aaKnown RBP36.41■■■■□ 3.42
CLN6-207ENST00000566347 EIF4G3O43432 1585 aaKnown RBP36.4■■■■□ 3.42
CLN6-207ENST00000566347 TARBP1Q13395 1621 aaKnown RBP36.39■■■■□ 3.42
CLN6-207ENST00000566347 POLA1P09884 1462 aaPredicted RBP36.38■■■■□ 3.41
CLN6-207ENST00000566347 TRIM41Q8WV44 630 aa36.26■■■■□ 3.4
CLN6-207ENST00000566347 AQRO60306 1485 aaKnown RBP eCLIP36.25■■■■□ 3.392e-7■■■■□ 23.4
CLN6-207ENST00000566347 SOGA1O94964 1423 aa36.23■■■■□ 3.39
CLN6-207ENST00000566347 CUX1P39880 1505 aa36.21■■■■□ 3.39
CLN6-207ENST00000566347 RAD54L2Q9Y4B4 1467 aa36.21■■■■□ 3.39
CLN6-207ENST00000566347 FGD5Q6ZNL6 1462 aa36.2■■■■□ 3.39
CLN6-207ENST00000566347 WDR97A6NE52 1622 aa36.12■■■■□ 3.37
CLN6-207ENST00000566347 TDRD9Q8NDG6 1382 aaKnown RBP36.09■■■■□ 3.37
CLN6-207ENST00000566347 CHD1O14646 1710 aa36.05■■■■□ 3.36
CLN6-207ENST00000566347 RIMBP3CA6NJZ7 1639 aa35.99■■■■□ 3.35
CLN6-207ENST00000566347 RIMBP3BA6NNM3 1639 aa35.99■■■■□ 3.35
CLN6-207ENST00000566347 RIMBP3Q9UFD9 1639 aa35.99■■■■□ 3.35
CLN6-207ENST00000566347 FBLN2P98095 1184 aa35.97■■■■□ 3.35
CLN6-207ENST00000566347 ARHGEF11O15085 1522 aa35.93■■■■□ 3.34
CLN6-207ENST00000566347 SNAPC4Q5SXM2 1469 aa35.92■■■■□ 3.34
CLN6-207ENST00000566347 GRIN2BQ13224 1484 aa35.9■■■■□ 3.34
CLN6-207ENST00000566347 MAGI1Q96QZ7 1491 aaPredicted RBP35.88■■■■□ 3.33
CLN6-207ENST00000566347 ABCA10Q8WWZ4 1543 aa35.83■■■■□ 3.33
CLN6-207ENST00000566347 GAPVD1Q14C86 1478 aa35.8■■■■□ 3.32
CLN6-207ENST00000566347 CHMP7Q8WUX9 453 aaPredicted RBP35.79■■■■□ 3.32
CLN6-207ENST00000566347 PBRM1Q86U86 1689 aa35.77■■■■□ 3.32
CLN6-207ENST00000566347 WRNQ14191 1432 aaPredicted RBP eCLIP35.75■■■■□ 3.311e-9■■■■■ 46
CLN6-207ENST00000566347 TOP2BQ02880 1626 aa35.75■■■■□ 3.31
CLN6-207ENST00000566347 BIVM-ERCC5R4GMW8 1640 aa35.75■■■■□ 3.31
CLN6-207ENST00000566347 SYNJ2O15056 1496 aa35.74■■■■□ 3.31
CLN6-207ENST00000566347 ABCA5Q8WWZ7 1642 aa35.74■■■■□ 3.31
CLN6-207ENST00000566347 SYNJ1O43426 1573 aa35.7■■■■□ 3.31
CLN6-207ENST00000566347 CLASP1Q7Z460 1538 aa35.66■■■■□ 3.3
CLN6-207ENST00000566347 CYB5RLQ6IPT4 315 aa35.61■■■■□ 3.29
CLN6-207ENST00000566347 ARAP1Q96P48 1450 aa35.58■■■■□ 3.29
CLN6-207ENST00000566347 ADAMTS12P58397 1594 aa35.45■■■■□ 3.27
CLN6-207ENST00000566347 GRIN2AQ12879 1464 aa35.42■■■■□ 3.26
CLN6-207ENST00000566347 ERICH3Q5RHP9 1530 aa35.41■■■■□ 3.26
CLN6-207ENST00000566347 FHAD1B1AJZ9 1412 aa35.38■■■■□ 3.25
CLN6-207ENST00000566347 NUP160Q12769 1436 aa35.3■■■■□ 3.24
CLN6-207ENST00000566347 CEP170Q5SW79 1584 aa35.25■■■■□ 3.23
CLN6-207ENST00000566347 TRHP20396 242 aaPredicted RBP35.13■■■■□ 3.21
CLN6-207ENST00000566347 SHROOM2Q13796 1616 aa35.11■■■■□ 3.21
CLN6-207ENST00000566347 KIF27Q86VH2 1401 aa35.07■■■■□ 3.21
CLN6-207ENST00000566347 ERCC6L2Q5T890 1561 aa35.07■■■■□ 3.2
CLN6-207ENST00000566347 IGF1RP08069 1367 aa34.99■■■■□ 3.19
CLN6-207ENST00000566347 CUL7Q14999 1698 aa34.96■■■■□ 3.19
CLN6-207ENST00000566347 RUSC2Q8N2Y8 1516 aa34.94■■■■□ 3.18
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms