Protein–RNA interactions for Protein: S4R434

TMEM56-RWDD3, TMEM56-RWDD3 readthrough, humanhuman

Predictions only

Length 201 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM56-RWDD3S4R434 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC15.58■□□□□ 0.08
TMEM56-RWDD3S4R434 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC15.58■□□□□ 0.08
TMEM56-RWDD3S4R434 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC15.58■□□□□ 0.08
TMEM56-RWDD3S4R434 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC15.58■□□□□ 0.08
TMEM56-RWDD3S4R434 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TMEM56-RWDD3S4R434 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC15.57■□□□□ 0.08
TMEM56-RWDD3S4R434 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
TMEM56-RWDD3S4R434 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
TMEM56-RWDD3S4R434 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
TMEM56-RWDD3S4R434 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
TMEM56-RWDD3S4R434 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
TMEM56-RWDD3S4R434 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC15.57■□□□□ 0.08
TMEM56-RWDD3S4R434 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TMEM56-RWDD3S4R434 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
TMEM56-RWDD3S4R434 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
TMEM56-RWDD3S4R434 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
TMEM56-RWDD3S4R434 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC15.57■□□□□ 0.08
TMEM56-RWDD3S4R434 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC15.57■□□□□ 0.08
TMEM56-RWDD3S4R434 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TMEM56-RWDD3S4R434 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC15.57■□□□□ 0.08
TMEM56-RWDD3S4R434 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC15.57■□□□□ 0.08
TMEM56-RWDD3S4R434 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
TMEM56-RWDD3S4R434 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC15.57■□□□□ 0.08
TMEM56-RWDD3S4R434 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC15.57■□□□□ 0.08
TMEM56-RWDD3S4R434 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC15.57■□□□□ 0.08
TMEM56-RWDD3S4R434 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC15.57■□□□□ 0.08
TMEM56-RWDD3S4R434 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
TMEM56-RWDD3S4R434 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC15.57■□□□□ 0.08
TMEM56-RWDD3S4R434 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
TMEM56-RWDD3S4R434 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
TMEM56-RWDD3S4R434 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TMEM56-RWDD3S4R434 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
TMEM56-RWDD3S4R434 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC15.57■□□□□ 0.08
TMEM56-RWDD3S4R434 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TMEM56-RWDD3S4R434 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TMEM56-RWDD3S4R434 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TMEM56-RWDD3S4R434 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC15.57■□□□□ 0.08
TMEM56-RWDD3S4R434 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
TMEM56-RWDD3S4R434 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
TMEM56-RWDD3S4R434 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
TMEM56-RWDD3S4R434 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC15.56■□□□□ 0.08
TMEM56-RWDD3S4R434 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
TMEM56-RWDD3S4R434 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
TMEM56-RWDD3S4R434 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TMEM56-RWDD3S4R434 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC15.56■□□□□ 0.08
TMEM56-RWDD3S4R434 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
TMEM56-RWDD3S4R434 LTB4R2-202ENST00000528054 3092 ntBASIC15.56■□□□□ 0.08
TMEM56-RWDD3S4R434 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC15.56■□□□□ 0.08
TMEM56-RWDD3S4R434 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC15.56■□□□□ 0.08
TMEM56-RWDD3S4R434 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TMEM56-RWDD3S4R434 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TMEM56-RWDD3S4R434 GGT1-206ENST00000404223 952 ntTSL 2 BASIC15.56■□□□□ 0.08
TMEM56-RWDD3S4R434 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC15.56■□□□□ 0.08
TMEM56-RWDD3S4R434 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC15.56■□□□□ 0.08
TMEM56-RWDD3S4R434 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TMEM56-RWDD3S4R434 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TMEM56-RWDD3S4R434 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC15.56■□□□□ 0.08
TMEM56-RWDD3S4R434 CRK-204ENST00000574295 1391 ntTSL 5 BASIC15.56■□□□□ 0.08
TMEM56-RWDD3S4R434 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
TMEM56-RWDD3S4R434 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC15.56■□□□□ 0.08
TMEM56-RWDD3S4R434 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC15.56■□□□□ 0.08
TMEM56-RWDD3S4R434 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
TMEM56-RWDD3S4R434 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TMEM56-RWDD3S4R434 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TMEM56-RWDD3S4R434 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC15.56■□□□□ 0.08
TMEM56-RWDD3S4R434 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TMEM56-RWDD3S4R434 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC15.56■□□□□ 0.08
TMEM56-RWDD3S4R434 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TMEM56-RWDD3S4R434 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC15.56■□□□□ 0.08
TMEM56-RWDD3S4R434 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TMEM56-RWDD3S4R434 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC15.55■□□□□ 0.08
TMEM56-RWDD3S4R434 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TMEM56-RWDD3S4R434 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TMEM56-RWDD3S4R434 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TMEM56-RWDD3S4R434 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
TMEM56-RWDD3S4R434 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TMEM56-RWDD3S4R434 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TMEM56-RWDD3S4R434 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TMEM56-RWDD3S4R434 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TMEM56-RWDD3S4R434 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC15.55■□□□□ 0.08
TMEM56-RWDD3S4R434 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TMEM56-RWDD3S4R434 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TMEM56-RWDD3S4R434 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC15.55■□□□□ 0.08
TMEM56-RWDD3S4R434 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
TMEM56-RWDD3S4R434 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TMEM56-RWDD3S4R434 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
TMEM56-RWDD3S4R434 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TMEM56-RWDD3S4R434 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TMEM56-RWDD3S4R434 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TMEM56-RWDD3S4R434 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TMEM56-RWDD3S4R434 MDK-213ENST00000617138 635 ntTSL 2 BASIC15.55■□□□□ 0.08
TMEM56-RWDD3S4R434 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC15.55■□□□□ 0.08
TMEM56-RWDD3S4R434 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
TMEM56-RWDD3S4R434 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
TMEM56-RWDD3S4R434 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC15.55■□□□□ 0.08
TMEM56-RWDD3S4R434 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
TMEM56-RWDD3S4R434 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TMEM56-RWDD3S4R434 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TMEM56-RWDD3S4R434 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TMEM56-RWDD3S4R434 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC15.55■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms