Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC18.41■□□□□ 0.54
LSM1O15116 UNC93B4-201ENST00000505679 747 ntBASIC18.41■□□□□ 0.54
LSM1O15116 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LSM1O15116 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LSM1O15116 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC18.41■□□□□ 0.54
LSM1O15116 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LSM1O15116 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC18.41■□□□□ 0.54
LSM1O15116 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LSM1O15116 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LSM1O15116 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LSM1O15116 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC18.41■□□□□ 0.54
LSM1O15116 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC18.41■□□□□ 0.54
LSM1O15116 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LSM1O15116 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC18.41■□□□□ 0.54
LSM1O15116 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LSM1O15116 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LSM1O15116 ADK-206ENST00000541550 2222 ntTSL 2 BASIC18.41■□□□□ 0.54
LSM1O15116 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LSM1O15116 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LSM1O15116 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LSM1O15116 AL512353.2-201ENST00000448759 1962 ntBASIC18.41■□□□□ 0.54
LSM1O15116 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC18.4■□□□□ 0.54
LSM1O15116 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
LSM1O15116 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC18.4■□□□□ 0.54
LSM1O15116 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
LSM1O15116 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC18.4■□□□□ 0.54
LSM1O15116 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LSM1O15116 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC18.4■□□□□ 0.54
LSM1O15116 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC18.4■□□□□ 0.54
LSM1O15116 AC009113.1-201ENST00000570267 2443 ntBASIC18.4■□□□□ 0.54
LSM1O15116 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LSM1O15116 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC18.4■□□□□ 0.54
LSM1O15116 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LSM1O15116 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LSM1O15116 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LSM1O15116 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
LSM1O15116 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC18.4■□□□□ 0.54
LSM1O15116 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC18.4■□□□□ 0.54
LSM1O15116 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC18.4■□□□□ 0.54
LSM1O15116 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC18.4■□□□□ 0.54
LSM1O15116 AC104771.1-201ENST00000603335 964 ntBASIC18.4■□□□□ 0.54
LSM1O15116 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC18.4■□□□□ 0.54
LSM1O15116 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
LSM1O15116 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LSM1O15116 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC18.4■□□□□ 0.54
LSM1O15116 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
LSM1O15116 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
LSM1O15116 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LSM1O15116 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC18.4■□□□□ 0.54
LSM1O15116 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
LSM1O15116 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
LSM1O15116 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
LSM1O15116 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
LSM1O15116 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC18.4■□□□□ 0.54
LSM1O15116 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LSM1O15116 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
LSM1O15116 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
LSM1O15116 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.54
LSM1O15116 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.54
LSM1O15116 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
LSM1O15116 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.54
LSM1O15116 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.54
LSM1O15116 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LSM1O15116 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LSM1O15116 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
LSM1O15116 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC18.39■□□□□ 0.53
LSM1O15116 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LSM1O15116 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC18.39■□□□□ 0.53
LSM1O15116 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LSM1O15116 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
LSM1O15116 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC18.39■□□□□ 0.53
LSM1O15116 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC18.39■□□□□ 0.53
LSM1O15116 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
LSM1O15116 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
LSM1O15116 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC18.39■□□□□ 0.53
LSM1O15116 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
LSM1O15116 NOC2LP1-202ENST00000452600 2235 ntBASIC18.39■□□□□ 0.53
LSM1O15116 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
LSM1O15116 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
LSM1O15116 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
LSM1O15116 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LSM1O15116 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC18.39■□□□□ 0.53
LSM1O15116 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC18.39■□□□□ 0.53
LSM1O15116 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
LSM1O15116 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
LSM1O15116 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LSM1O15116 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LSM1O15116 WIZP1-201ENST00000531444 2299 ntBASIC18.38■□□□□ 0.53
LSM1O15116 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LSM1O15116 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC18.38■□□□□ 0.53
LSM1O15116 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC18.38■□□□□ 0.53
LSM1O15116 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LSM1O15116 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LSM1O15116 POM121L13P-201ENST00000422362 380 ntBASIC18.38■□□□□ 0.53
LSM1O15116 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
LSM1O15116 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LSM1O15116 Six3os1_6.1-201ENST00000620790 196 ntBASIC18.38■□□□□ 0.53
LSM1O15116 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
LSM1O15116 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
LSM1O15116 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 74 ms