Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
LSM1O15116 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC18.45■□□□□ 0.54
LSM1O15116 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LSM1O15116 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.45■□□□□ 0.54
LSM1O15116 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LSM1O15116 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC18.44■□□□□ 0.54
LSM1O15116 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC18.44■□□□□ 0.54
LSM1O15116 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC18.44■□□□□ 0.54
LSM1O15116 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
LSM1O15116 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
LSM1O15116 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LSM1O15116 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC18.44■□□□□ 0.54
LSM1O15116 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LSM1O15116 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC18.44■□□□□ 0.54
LSM1O15116 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC18.44■□□□□ 0.54
LSM1O15116 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC18.44■□□□□ 0.54
LSM1O15116 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC18.44■□□□□ 0.54
LSM1O15116 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC18.44■□□□□ 0.54
LSM1O15116 INO80E-214ENST00000620599 515 ntTSL 2 BASIC18.44■□□□□ 0.54
LSM1O15116 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LSM1O15116 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC18.44■□□□□ 0.54
LSM1O15116 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC18.44■□□□□ 0.54
LSM1O15116 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
LSM1O15116 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC18.44■□□□□ 0.54
LSM1O15116 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC18.44■□□□□ 0.54
LSM1O15116 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
LSM1O15116 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
LSM1O15116 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LSM1O15116 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LSM1O15116 FEM1AP3-201ENST00000403722 1741 ntBASIC18.43■□□□□ 0.54
LSM1O15116 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC18.43■□□□□ 0.54
LSM1O15116 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LSM1O15116 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
LSM1O15116 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LSM1O15116 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LSM1O15116 RHOD-202ENST00000532559 538 ntTSL 3 BASIC18.43■□□□□ 0.54
LSM1O15116 AC142086.2-201ENST00000569753 217 ntBASIC18.43■□□□□ 0.54
LSM1O15116 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC18.43■□□□□ 0.54
LSM1O15116 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC18.43■□□□□ 0.54
LSM1O15116 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC18.43■□□□□ 0.54
LSM1O15116 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
LSM1O15116 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
LSM1O15116 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LSM1O15116 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
LSM1O15116 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC18.43■□□□□ 0.54
LSM1O15116 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
LSM1O15116 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
LSM1O15116 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LSM1O15116 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
LSM1O15116 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
LSM1O15116 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
LSM1O15116 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LSM1O15116 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
LSM1O15116 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
LSM1O15116 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
LSM1O15116 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LSM1O15116 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LSM1O15116 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC18.42■□□□□ 0.54
LSM1O15116 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
LSM1O15116 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC18.42■□□□□ 0.54
LSM1O15116 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC18.42■□□□□ 0.54
LSM1O15116 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LSM1O15116 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
LSM1O15116 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LSM1O15116 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC18.42■□□□□ 0.54
LSM1O15116 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
LSM1O15116 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC18.42■□□□□ 0.54
LSM1O15116 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC18.42■□□□□ 0.54
LSM1O15116 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC18.42■□□□□ 0.54
LSM1O15116 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
LSM1O15116 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC18.42■□□□□ 0.54
LSM1O15116 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
LSM1O15116 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LSM1O15116 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC18.42■□□□□ 0.54
LSM1O15116 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LSM1O15116 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LSM1O15116 USP49-202ENST00000373010 2446 ntTSL 5 BASIC18.42■□□□□ 0.54
LSM1O15116 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
LSM1O15116 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LSM1O15116 Z98044.1-201ENST00000632503 1764 ntBASIC18.42■□□□□ 0.54
LSM1O15116 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LSM1O15116 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC18.42■□□□□ 0.54
LSM1O15116 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC18.42■□□□□ 0.54
LSM1O15116 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
LSM1O15116 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
LSM1O15116 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LSM1O15116 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LSM1O15116 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LSM1O15116 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LSM1O15116 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC18.41■□□□□ 0.54
LSM1O15116 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LSM1O15116 AC104581.1-202ENST00000635932 2618 ntBASIC18.41■□□□□ 0.54
LSM1O15116 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
LSM1O15116 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
LSM1O15116 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC18.41■□□□□ 0.54
LSM1O15116 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LSM1O15116 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC18.41■□□□□ 0.54
LSM1O15116 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LSM1O15116 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LSM1O15116 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 69.6 ms