Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC26.61■■□□□ 1.85
PCDHA3Q9Y5H8 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
PCDHA3Q9Y5H8 MIR6090-201ENST00000622481 60 ntBASIC26.6■■□□□ 1.85
PCDHA3Q9Y5H8 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
PCDHA3Q9Y5H8 DUX4L28-201ENST00000623687 678 ntBASIC26.59■■□□□ 1.85
PCDHA3Q9Y5H8 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
PCDHA3Q9Y5H8 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
PCDHA3Q9Y5H8 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC26.58■■□□□ 1.85
PCDHA3Q9Y5H8 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC26.58■■□□□ 1.85
PCDHA3Q9Y5H8 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
PCDHA3Q9Y5H8 WHAMMP2-203ENST00000563942 1603 ntBASIC26.57■■□□□ 1.84
PCDHA3Q9Y5H8 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
PCDHA3Q9Y5H8 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC26.57■■□□□ 1.84
PCDHA3Q9Y5H8 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC26.57■■□□□ 1.84
PCDHA3Q9Y5H8 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
PCDHA3Q9Y5H8 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC26.56■■□□□ 1.84
PCDHA3Q9Y5H8 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
PCDHA3Q9Y5H8 EI24-212ENST00000615917 1407 ntTSL 2 BASIC26.56■■□□□ 1.84
PCDHA3Q9Y5H8 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
PCDHA3Q9Y5H8 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC26.55■■□□□ 1.84
PCDHA3Q9Y5H8 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
PCDHA3Q9Y5H8 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC26.55■■□□□ 1.84
PCDHA3Q9Y5H8 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC26.54■■□□□ 1.84
PCDHA3Q9Y5H8 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC26.53■■□□□ 1.84
PCDHA3Q9Y5H8 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC26.53■■□□□ 1.84
PCDHA3Q9Y5H8 LINC00273-201ENST00000539813 1452 ntBASIC26.53■■□□□ 1.84
PCDHA3Q9Y5H8 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC26.53■■□□□ 1.84
PCDHA3Q9Y5H8 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC26.52■■□□□ 1.84
PCDHA3Q9Y5H8 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
PCDHA3Q9Y5H8 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC26.52■■□□□ 1.84
PCDHA3Q9Y5H8 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
PCDHA3Q9Y5H8 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC26.51■■□□□ 1.83
PCDHA3Q9Y5H8 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
PCDHA3Q9Y5H8 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
PCDHA3Q9Y5H8 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
PCDHA3Q9Y5H8 CREM-210ENST00000374721 2020 ntTSL 5 BASIC26.5■■□□□ 1.83
PCDHA3Q9Y5H8 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC26.5■■□□□ 1.83
PCDHA3Q9Y5H8 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
PCDHA3Q9Y5H8 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
PCDHA3Q9Y5H8 AC018358.1-201ENST00000631079 1402 ntBASIC26.49■■□□□ 1.83
PCDHA3Q9Y5H8 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
PCDHA3Q9Y5H8 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
PCDHA3Q9Y5H8 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC26.49■■□□□ 1.83
PCDHA3Q9Y5H8 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC26.48■■□□□ 1.83
PCDHA3Q9Y5H8 MIR3665-201ENST00000578708 105 ntBASIC26.48■■□□□ 1.83
PCDHA3Q9Y5H8 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
PCDHA3Q9Y5H8 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC26.47■■□□□ 1.83
PCDHA3Q9Y5H8 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
PCDHA3Q9Y5H8 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC26.46■■□□□ 1.83
PCDHA3Q9Y5H8 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
PCDHA3Q9Y5H8 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC26.46■■□□□ 1.83
PCDHA3Q9Y5H8 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC26.46■■□□□ 1.83
PCDHA3Q9Y5H8 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
PCDHA3Q9Y5H8 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC26.46■■□□□ 1.83
PCDHA3Q9Y5H8 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
PCDHA3Q9Y5H8 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC26.45■■□□□ 1.83
PCDHA3Q9Y5H8 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
PCDHA3Q9Y5H8 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC26.44■■□□□ 1.82
PCDHA3Q9Y5H8 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
PCDHA3Q9Y5H8 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
PCDHA3Q9Y5H8 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC26.44■■□□□ 1.82
PCDHA3Q9Y5H8 PKM-203ENST00000389093 2279 ntTSL 5 BASIC26.43■■□□□ 1.82
PCDHA3Q9Y5H8 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
PCDHA3Q9Y5H8 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC26.43■■□□□ 1.82
PCDHA3Q9Y5H8 SHF-207ENST00000560540 2062 ntTSL 5 BASIC26.43■■□□□ 1.82
PCDHA3Q9Y5H8 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC26.42■■□□□ 1.82
PCDHA3Q9Y5H8 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC26.41■■□□□ 1.82
PCDHA3Q9Y5H8 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC26.41■■□□□ 1.82
PCDHA3Q9Y5H8 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
PCDHA3Q9Y5H8 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
PCDHA3Q9Y5H8 AP006261.1-201ENST00000584783 668 ntBASIC26.4■■□□□ 1.82
PCDHA3Q9Y5H8 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC26.4■■□□□ 1.82
PCDHA3Q9Y5H8 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
PCDHA3Q9Y5H8 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC26.39■■□□□ 1.82
PCDHA3Q9Y5H8 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
PCDHA3Q9Y5H8 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC26.39■■□□□ 1.82
PCDHA3Q9Y5H8 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
PCDHA3Q9Y5H8 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC26.39■■□□□ 1.81
PCDHA3Q9Y5H8 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC26.39■■□□□ 1.81
PCDHA3Q9Y5H8 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC26.38■■□□□ 1.81
PCDHA3Q9Y5H8 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
PCDHA3Q9Y5H8 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC26.37■■□□□ 1.81
PCDHA3Q9Y5H8 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC26.37■■□□□ 1.81
PCDHA3Q9Y5H8 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
PCDHA3Q9Y5H8 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC26.37■■□□□ 1.81
PCDHA3Q9Y5H8 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC26.37■■□□□ 1.81
PCDHA3Q9Y5H8 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC26.36■■□□□ 1.81
PCDHA3Q9Y5H8 CALM3-209ENST00000597743 577 ntTSL 4 BASIC26.36■■□□□ 1.81
PCDHA3Q9Y5H8 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC26.36■■□□□ 1.81
PCDHA3Q9Y5H8 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
PCDHA3Q9Y5H8 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC26.35■■□□□ 1.81
PCDHA3Q9Y5H8 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC26.35■■□□□ 1.81
PCDHA3Q9Y5H8 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC26.35■■□□□ 1.81
PCDHA3Q9Y5H8 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC26.34■■□□□ 1.81
PCDHA3Q9Y5H8 NRG1-221ENST00000614767 762 ntTSL 5 BASIC26.34■■□□□ 1.81
PCDHA3Q9Y5H8 AC087741.3-201ENST00000624270 1347 ntBASIC26.34■■□□□ 1.81
PCDHA3Q9Y5H8 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
PCDHA3Q9Y5H8 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC26.34■■□□□ 1.81
PCDHA3Q9Y5H8 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
PCDHA3Q9Y5H8 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms