Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
SLC28A1O00337 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
SLC28A1O00337 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC24.45■■□□□ 1.5
SLC28A1O00337 MIR3665-201ENST00000578708 105 ntBASIC24.45■■□□□ 1.5
SLC28A1O00337 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC24.43■■□□□ 1.5
SLC28A1O00337 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
SLC28A1O00337 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
SLC28A1O00337 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
SLC28A1O00337 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
SLC28A1O00337 LINC00273-201ENST00000539813 1452 ntBASIC24.42■■□□□ 1.5
SLC28A1O00337 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC24.42■■□□□ 1.5
SLC28A1O00337 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC24.42■■□□□ 1.5
SLC28A1O00337 WHAMMP2-203ENST00000563942 1603 ntBASIC24.42■■□□□ 1.5
SLC28A1O00337 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
SLC28A1O00337 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC24.41■■□□□ 1.5
SLC28A1O00337 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
SLC28A1O00337 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC24.41■■□□□ 1.5
SLC28A1O00337 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
SLC28A1O00337 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
SLC28A1O00337 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC24.4■■□□□ 1.5
SLC28A1O00337 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC24.4■■□□□ 1.5
SLC28A1O00337 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
SLC28A1O00337 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
SLC28A1O00337 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
SLC28A1O00337 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
SLC28A1O00337 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC24.39■■□□□ 1.5
SLC28A1O00337 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
SLC28A1O00337 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC24.38■■□□□ 1.49
SLC28A1O00337 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC24.38■■□□□ 1.49
SLC28A1O00337 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC24.38■■□□□ 1.49
SLC28A1O00337 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC24.38■■□□□ 1.49
SLC28A1O00337 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
SLC28A1O00337 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC24.38■■□□□ 1.49
SLC28A1O00337 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
SLC28A1O00337 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC24.37■■□□□ 1.49
SLC28A1O00337 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC24.37■■□□□ 1.49
SLC28A1O00337 AP006261.1-201ENST00000584783 668 ntBASIC24.37■■□□□ 1.49
SLC28A1O00337 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC24.36■■□□□ 1.49
SLC28A1O00337 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
SLC28A1O00337 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
SLC28A1O00337 AC018358.1-201ENST00000631079 1402 ntBASIC24.35■■□□□ 1.49
SLC28A1O00337 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC24.35■■□□□ 1.49
SLC28A1O00337 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
SLC28A1O00337 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC24.35■■□□□ 1.49
SLC28A1O00337 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
SLC28A1O00337 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
SLC28A1O00337 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
SLC28A1O00337 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
SLC28A1O00337 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
SLC28A1O00337 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC24.33■■□□□ 1.49
SLC28A1O00337 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
SLC28A1O00337 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC24.32■■□□□ 1.48
SLC28A1O00337 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC24.31■■□□□ 1.48
SLC28A1O00337 CREM-210ENST00000374721 2020 ntTSL 5 BASIC24.31■■□□□ 1.48
SLC28A1O00337 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC24.3■■□□□ 1.48
SLC28A1O00337 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC24.3■■□□□ 1.48
SLC28A1O00337 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
SLC28A1O00337 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
SLC28A1O00337 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
SLC28A1O00337 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
SLC28A1O00337 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC24.28■■□□□ 1.48
SLC28A1O00337 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC24.28■■□□□ 1.48
SLC28A1O00337 CIB2-204ENST00000557846 934 ntTSL 3 BASIC24.28■■□□□ 1.48
SLC28A1O00337 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
SLC28A1O00337 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC24.27■■□□□ 1.48
SLC28A1O00337 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC24.27■■□□□ 1.48
SLC28A1O00337 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC24.27■■□□□ 1.48
SLC28A1O00337 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
SLC28A1O00337 CALM3-209ENST00000597743 577 ntTSL 4 BASIC24.27■■□□□ 1.48
SLC28A1O00337 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC24.27■■□□□ 1.48
SLC28A1O00337 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
SLC28A1O00337 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC24.26■■□□□ 1.47
SLC28A1O00337 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC24.26■■□□□ 1.47
SLC28A1O00337 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
SLC28A1O00337 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC24.26■■□□□ 1.47
SLC28A1O00337 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
SLC28A1O00337 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC24.26■■□□□ 1.47
SLC28A1O00337 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC24.26■■□□□ 1.47
SLC28A1O00337 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
SLC28A1O00337 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC24.25■■□□□ 1.47
SLC28A1O00337 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC24.25■■□□□ 1.47
SLC28A1O00337 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
SLC28A1O00337 AC087741.3-201ENST00000624270 1347 ntBASIC24.25■■□□□ 1.47
SLC28A1O00337 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
SLC28A1O00337 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC24.24■■□□□ 1.47
SLC28A1O00337 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
SLC28A1O00337 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC24.24■■□□□ 1.47
SLC28A1O00337 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC24.24■■□□□ 1.47
SLC28A1O00337 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
SLC28A1O00337 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC24.23■■□□□ 1.47
SLC28A1O00337 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
SLC28A1O00337 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
SLC28A1O00337 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC24.23■■□□□ 1.47
SLC28A1O00337 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC24.23■■□□□ 1.47
SLC28A1O00337 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
SLC28A1O00337 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
SLC28A1O00337 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC24.22■■□□□ 1.47
SLC28A1O00337 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC24.21■■□□□ 1.47
SLC28A1O00337 NRG1-221ENST00000614767 762 ntTSL 5 BASIC24.21■■□□□ 1.47
SLC28A1O00337 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC24.21■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms