Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 RN7SKP53-201ENST00000411337 315 ntBASIC4.73□□□□□ -1.65
SHANK3Q9BYB0 SDCBPP2-201ENST00000424643 885 ntBASIC4.73□□□□□ -1.65
SHANK3Q9BYB0 AL035458.1-201ENST00000433096 585 ntBASIC4.73□□□□□ -1.65
SHANK3Q9BYB0 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC4.73□□□□□ -1.65
SHANK3Q9BYB0 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC4.73□□□□□ -1.65
SHANK3Q9BYB0 AC080014.1-201ENST00000496877 1201 ntBASIC4.73□□□□□ -1.65
SHANK3Q9BYB0 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC4.73□□□□□ -1.65
SHANK3Q9BYB0 AC017037.1-201ENST00000508460 471 ntBASIC4.73□□□□□ -1.65
SHANK3Q9BYB0 HIGD1AP3-201ENST00000515857 278 ntBASIC4.73□□□□□ -1.65
SHANK3Q9BYB0 RAD21-204ENST00000518055 896 ntTSL 2 BASIC4.73□□□□□ -1.65
SHANK3Q9BYB0 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
SHANK3Q9BYB0 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC4.73□□□□□ -1.65
SHANK3Q9BYB0 MEG8-215ENST00000555354 469 ntTSL 3 BASIC4.73□□□□□ -1.65
SHANK3Q9BYB0 CYP4A43P-201ENST00000568156 121 ntBASIC4.73□□□□□ -1.65
SHANK3Q9BYB0 MIR5186-201ENST00000577504 120 ntBASIC4.73□□□□□ -1.65
SHANK3Q9BYB0 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SHANK3Q9BYB0 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SHANK3Q9BYB0 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SHANK3Q9BYB0 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC4.73□□□□□ -1.65
SHANK3Q9BYB0 AL133383.2-201ENST00000622958 2336 ntBASIC4.73□□□□□ -1.65
SHANK3Q9BYB0 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC4.73□□□□□ -1.65
SHANK3Q9BYB0 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SHANK3Q9BYB0 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SHANK3Q9BYB0 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC4.73□□□□□ -1.65
SHANK3Q9BYB0 GVINP1-202ENST00000531871 7271 ntBASIC4.72□□□□□ -1.65
SHANK3Q9BYB0 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
SHANK3Q9BYB0 RNA5SP146-201ENST00000410743 123 ntBASIC4.72□□□□□ -1.65
SHANK3Q9BYB0 GSTM3P2-201ENST00000412746 530 ntBASIC4.72□□□□□ -1.65
SHANK3Q9BYB0 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC4.72□□□□□ -1.65
SHANK3Q9BYB0 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC4.72□□□□□ -1.65
SHANK3Q9BYB0 UBA52P3-201ENST00000491303 382 ntBASIC4.72□□□□□ -1.65
SHANK3Q9BYB0 PHBP14-201ENST00000512887 367 ntBASIC4.72□□□□□ -1.65
SHANK3Q9BYB0 RNU6-237P-201ENST00000515985 71 ntBASIC4.72□□□□□ -1.65
SHANK3Q9BYB0 RNU2-27P-201ENST00000516185 142 ntBASIC4.72□□□□□ -1.65
SHANK3Q9BYB0 LINC00535-204ENST00000520513 305 ntTSL 3 BASIC4.72□□□□□ -1.65
SHANK3Q9BYB0 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC4.72□□□□□ -1.65
SHANK3Q9BYB0 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC4.72□□□□□ -1.65
SHANK3Q9BYB0 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC4.72□□□□□ -1.65
SHANK3Q9BYB0 AC006272.2-201ENST00000594725 163 ntBASIC4.72□□□□□ -1.65
SHANK3Q9BYB0 AC010591.1-201ENST00000603941 649 ntBASIC4.72□□□□□ -1.65
SHANK3Q9BYB0 MIR7112-201ENST00000616126 65 ntBASIC4.72□□□□□ -1.65
SHANK3Q9BYB0 U4.6-201ENST00000621618 127 ntBASIC4.72□□□□□ -1.65
SHANK3Q9BYB0 LYRM2-211ENST00000626778 696 ntTSL 5 BASIC4.72□□□□□ -1.65
SHANK3Q9BYB0 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SHANK3Q9BYB0 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC4.72□□□□□ -1.65
SHANK3Q9BYB0 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
SHANK3Q9BYB0 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SHANK3Q9BYB0 SNORA48.8-201ENST00000391324 134 ntBASIC4.72□□□□□ -1.65
SHANK3Q9BYB0 AC091862.1-201ENST00000438016 1100 ntBASIC4.72□□□□□ -1.65
SHANK3Q9BYB0 TMEM244-202ENST00000438392 565 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
SHANK3Q9BYB0 IGKV1OR-3-201ENST00000446944 348 ntBASIC4.72□□□□□ -1.65
SHANK3Q9BYB0 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC4.72□□□□□ -1.65
SHANK3Q9BYB0 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC4.72□□□□□ -1.65
SHANK3Q9BYB0 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC4.72□□□□□ -1.65
SHANK3Q9BYB0 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC4.72□□□□□ -1.65
SHANK3Q9BYB0 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC4.72□□□□□ -1.65
SHANK3Q9BYB0 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC4.71□□□□□ -1.65
SHANK3Q9BYB0 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.65
SHANK3Q9BYB0 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC4.71□□□□□ -1.65
SHANK3Q9BYB0 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
SHANK3Q9BYB0 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC4.71□□□□□ -1.66
SHANK3Q9BYB0 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC4.71□□□□□ -1.66
SHANK3Q9BYB0 HCFC2P1-201ENST00000392864 1592 ntBASIC4.71□□□□□ -1.66
SHANK3Q9BYB0 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC4.71□□□□□ -1.66
SHANK3Q9BYB0 HDGFP1-201ENST00000405943 252 ntBASIC4.71□□□□□ -1.66
SHANK3Q9BYB0 COTL1P1-201ENST00000422309 375 ntBASIC4.71□□□□□ -1.66
SHANK3Q9BYB0 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
SHANK3Q9BYB0 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC4.71□□□□□ -1.66
SHANK3Q9BYB0 AC005476.1-201ENST00000554427 397 ntBASIC4.71□□□□□ -1.66
SHANK3Q9BYB0 AL157394.1-201ENST00000562983 1224 ntBASIC4.71□□□□□ -1.66
SHANK3Q9BYB0 AC068790.5-201ENST00000602741 355 ntBASIC4.71□□□□□ -1.66
SHANK3Q9BYB0 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC4.71□□□□□ -1.66
SHANK3Q9BYB0 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC4.71□□□□□ -1.66
SHANK3Q9BYB0 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC4.71□□□□□ -1.66
SHANK3Q9BYB0 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SHANK3Q9BYB0 GABRA2-205ENST00000507069 1562 ntTSL 3 BASIC4.7□□□□□ -1.66
SHANK3Q9BYB0 GTF2H1-204ENST00000524753 1510 ntTSL 3 BASIC4.7□□□□□ -1.66
SHANK3Q9BYB0 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
SHANK3Q9BYB0 AL133480.1-201ENST00000411561 638 ntTSL 2 BASIC4.7□□□□□ -1.66
SHANK3Q9BYB0 TPTE2P3-201ENST00000441562 1189 ntBASIC4.7□□□□□ -1.66
SHANK3Q9BYB0 AC006445.1-201ENST00000491925 405 ntBASIC4.7□□□□□ -1.66
SHANK3Q9BYB0 TMPRSS11BNL-205ENST00000514295 1262 ntBASIC4.7□□□□□ -1.66
SHANK3Q9BYB0 AC131254.2-201ENST00000521908 550 ntTSL 3 BASIC4.7□□□□□ -1.66
SHANK3Q9BYB0 AL049844.2-201ENST00000604280 628 ntBASIC4.7□□□□□ -1.66
SHANK3Q9BYB0 AC125613.1-204ENST00000636224 1248 ntTSL 5 BASIC4.7□□□□□ -1.66
SHANK3Q9BYB0 OR5AC4P-202ENST00000642086 985 ntBASIC4.7□□□□□ -1.66
SHANK3Q9BYB0 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC4.7□□□□□ -1.66
SHANK3Q9BYB0 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC4.7□□□□□ -1.66
SHANK3Q9BYB0 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
SHANK3Q9BYB0 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC4.7□□□□□ -1.66
SHANK3Q9BYB0 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC4.7□□□□□ -1.66
SHANK3Q9BYB0 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC4.7□□□□□ -1.66
SHANK3Q9BYB0 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SHANK3Q9BYB0 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
SHANK3Q9BYB0 BMS1P3-201ENST00000372011 932 ntBASIC4.69□□□□□ -1.66
SHANK3Q9BYB0 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC4.69□□□□□ -1.66
SHANK3Q9BYB0 AC015971.1-204ENST00000424788 1147 ntTSL 5 BASIC4.69□□□□□ -1.66
SHANK3Q9BYB0 UBE2V1P1-201ENST00000430836 445 ntBASIC4.69□□□□□ -1.66
SHANK3Q9BYB0 DNAJC19P8-201ENST00000452887 259 ntBASIC4.69□□□□□ -1.66
SHANK3Q9BYB0 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC4.69□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 148.4 ms