Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
LSM1O15116 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC18.74■□□□□ 0.59
LSM1O15116 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LSM1O15116 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
LSM1O15116 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LSM1O15116 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LSM1O15116 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
LSM1O15116 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LSM1O15116 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
LSM1O15116 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
LSM1O15116 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
LSM1O15116 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC18.73■□□□□ 0.59
LSM1O15116 RER1-204ENST00000378518 522 ntTSL 3 BASIC18.73■□□□□ 0.59
LSM1O15116 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LSM1O15116 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
LSM1O15116 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC18.73■□□□□ 0.59
LSM1O15116 DUSP5P2-201ENST00000426873 1033 ntBASIC18.73■□□□□ 0.59
LSM1O15116 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
LSM1O15116 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
LSM1O15116 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC18.73■□□□□ 0.59
LSM1O15116 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
LSM1O15116 DLX3-202ENST00000512495 834 ntTSL 2 BASIC18.73■□□□□ 0.59
LSM1O15116 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC18.73■□□□□ 0.59
LSM1O15116 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC18.73■□□□□ 0.59
LSM1O15116 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LSM1O15116 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LSM1O15116 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
LSM1O15116 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC18.73■□□□□ 0.59
LSM1O15116 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC18.73■□□□□ 0.59
LSM1O15116 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC18.73■□□□□ 0.59
LSM1O15116 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LSM1O15116 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LSM1O15116 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LSM1O15116 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
LSM1O15116 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC18.72■□□□□ 0.59
LSM1O15116 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
LSM1O15116 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LSM1O15116 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LSM1O15116 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
LSM1O15116 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
LSM1O15116 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC18.72■□□□□ 0.59
LSM1O15116 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC18.72■□□□□ 0.59
LSM1O15116 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC18.72■□□□□ 0.59
LSM1O15116 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
LSM1O15116 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
LSM1O15116 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC18.72■□□□□ 0.59
LSM1O15116 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LSM1O15116 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LSM1O15116 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC18.72■□□□□ 0.59
LSM1O15116 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
LSM1O15116 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
LSM1O15116 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LSM1O15116 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC18.72■□□□□ 0.59
LSM1O15116 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC18.72■□□□□ 0.59
LSM1O15116 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
LSM1O15116 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC18.72■□□□□ 0.59
LSM1O15116 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
LSM1O15116 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
LSM1O15116 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
LSM1O15116 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
LSM1O15116 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
LSM1O15116 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
LSM1O15116 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LSM1O15116 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LSM1O15116 GLI3-203ENST00000437480 451 ntTSL 2 BASIC18.71■□□□□ 0.59
LSM1O15116 AL121832.2-201ENST00000610979 668 ntBASIC18.71■□□□□ 0.59
LSM1O15116 AC092118.2-201ENST00000613495 667 ntBASIC18.71■□□□□ 0.59
LSM1O15116 AC124283.5-201ENST00000624661 1809 ntBASIC18.71■□□□□ 0.59
LSM1O15116 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
LSM1O15116 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC18.71■□□□□ 0.59
LSM1O15116 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
LSM1O15116 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
LSM1O15116 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
LSM1O15116 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LSM1O15116 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LSM1O15116 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.58
LSM1O15116 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
LSM1O15116 LTB4R2-202ENST00000528054 3092 ntBASIC18.7■□□□□ 0.58
LSM1O15116 TEX21P-204ENST00000641479 1693 ntBASIC18.7■□□□□ 0.58
LSM1O15116 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC18.7■□□□□ 0.58
LSM1O15116 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LSM1O15116 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
LSM1O15116 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
LSM1O15116 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC18.7■□□□□ 0.58
LSM1O15116 ZNF815P-204ENST00000434898 1737 ntBASIC18.7■□□□□ 0.58
LSM1O15116 AC083906.2-201ENST00000511578 360 ntBASIC18.7■□□□□ 0.58
LSM1O15116 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
LSM1O15116 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC18.7■□□□□ 0.58
LSM1O15116 AL161938.1-201ENST00000569833 2180 ntBASIC18.7■□□□□ 0.58
LSM1O15116 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
LSM1O15116 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC18.7■□□□□ 0.58
LSM1O15116 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LSM1O15116 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC18.7■□□□□ 0.58
LSM1O15116 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC18.7■□□□□ 0.58
LSM1O15116 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
LSM1O15116 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
LSM1O15116 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
LSM1O15116 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
LSM1O15116 AC141586.3-201ENST00000562166 1838 ntBASIC18.7■□□□□ 0.58
LSM1O15116 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms