RNA–Protein interactions for RNA: ENST00000625275.2

R3HCC1-210, Transcript of R3H domain and coiled-coil containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene R3HCC1, Length 1,489 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
R3HCC1-210ENST00000625275 NISCHQ9Y2I1 1504 aa49.24■■■■■ 5.47
R3HCC1-210ENST00000625275 CCDC180Q9P1Z9 1646 aa44.23■■■■■ 4.67
R3HCC1-210ENST00000625275 ABCC9O60706 1549 aa43.74■■■■■ 4.59
R3HCC1-210ENST00000625275 RB1CC1Q8TDY2 1594 aa41.86■■■■■ 4.29
R3HCC1-210ENST00000625275 NACADO15069 1562 aa41.63■■■■■ 4.25
R3HCC1-210ENST00000625275 DCAF8L2P0C7V8 631 aa41.25■■■■■ 4.19
R3HCC1-210ENST00000625275 MYO15BQ96JP2 1530 aa41.15■■■■■ 4.18
R3HCC1-210ENST00000625275 UNC13AQ9UPW8 1703 aa41.08■■■■■ 4.17
R3HCC1-210ENST00000625275 ZCCHC6Q5VYS8 1495 aaKnown RBP40.9■■■■■ 4.14
R3HCC1-210ENST00000625275 DCAF1Q9Y4B6 1507 aa40.73■■■■■ 4.11
R3HCC1-210ENST00000625275 PABPN1Q86U42 306 aaKnown RBP eCLIP40.66■■■■■ 4.1
R3HCC1-210ENST00000625275 DNAJC5BQ9UF47 199 aa40.64■■■■■ 4.1
R3HCC1-210ENST00000625275 BICRAQ9NZM4 1560 aa40.62■■■■■ 4.09
R3HCC1-210ENST00000625275 SCRIBQ14160 1630 aa40.23■■■■■ 4.03
R3HCC1-210ENST00000625275 SHROOM4Q9ULL8 1493 aa40.12■■■■■ 4.01
R3HCC1-210ENST00000625275 CC2D2AQ9P2K1 1620 aa39.61■■■■□ 3.93
R3HCC1-210ENST00000625275 EIF4G1Q04637 1599 aaKnown RBP39.59■■■■□ 3.93
R3HCC1-210ENST00000625275 CECR2Q9BXF3 1484 aa39.37■■■■□ 3.89
R3HCC1-210ENST00000625275 SMARCA4P51532 1647 aa38.42■■■■□ 3.74
R3HCC1-210ENST00000625275 NCAPD3P42695 1498 aa38.35■■■■□ 3.73
R3HCC1-210ENST00000625275 ATAD2BQ9ULI0 1458 aa38.29■■■■□ 3.72
R3HCC1-210ENST00000625275 SMARCA2P51531 1590 aa38.27■■■■□ 3.72
R3HCC1-210ENST00000625275 BAZ1AQ9NRL2 1556 aaPredicted RBP38.24■■■■□ 3.71
R3HCC1-210ENST00000625275 HMGXB3Q12766 1538 aa38.19■■■■□ 3.7
R3HCC1-210ENST00000625275 PEG3Q9GZU2 1588 aa38.04■■■■□ 3.68
R3HCC1-210ENST00000625275 BAZ1BQ9UIG0 1483 aaKnown RBP37.97■■■■□ 3.67
R3HCC1-210ENST00000625275 MROH2BQ7Z745 1585 aa37.94■■■■□ 3.66
R3HCC1-210ENST00000625275 ERCC6Q03468 1493 aa37.76■■■■□ 3.63
R3HCC1-210ENST00000625275 NESP48681 1621 aa37.66■■■■□ 3.62
R3HCC1-210ENST00000625275 CUX2O14529 1486 aa37.61■■■■□ 3.61
R3HCC1-210ENST00000625275 WIZO95785 1651 aa37.56■■■■□ 3.6
R3HCC1-210ENST00000625275 LAMC3Q9Y6N6 1575 aa37.54■■■■□ 3.6
R3HCC1-210ENST00000625275 KIF21AQ7Z4S6 1674 aa37.35■■■■□ 3.57
R3HCC1-210ENST00000625275 THOC2Q8NI27 1593 aaKnown RBP37.34■■■■□ 3.57
R3HCC1-210ENST00000625275 RSF1Q96T23 1441 aaPredicted RBP37.22■■■■□ 3.55
R3HCC1-210ENST00000625275 PDS5BQ9NTI5 1447 aa37.21■■■■□ 3.55
R3HCC1-210ENST00000625275 CADPSQ9ULU8 1353 aa37.17■■■■□ 3.54
R3HCC1-210ENST00000625275 DNAJC5Q9H3Z4 198 aa37.13■■■■□ 3.53
R3HCC1-210ENST00000625275 TOP2AP11388 1531 aaKnown RBP37.1■■■■□ 3.53
R3HCC1-210ENST00000625275 MRC2Q9UBG0 1479 aa36.92■■■■□ 3.5
R3HCC1-210ENST00000625275 WDR62O43379 1518 aa36.86■■■■□ 3.49
R3HCC1-210ENST00000625275 CFTRP13569 1480 aa36.85■■■■□ 3.49
R3HCC1-210ENST00000625275 CEP164Q9UPV0 1460 aa36.84■■■■□ 3.49
R3HCC1-210ENST00000625275 PRDM2Q13029 1718 aa36.79■■■■□ 3.48
R3HCC1-210ENST00000625275 FANCD2Q9BXW9 1451 aa36.79■■■■□ 3.48
R3HCC1-210ENST00000625275 CCDC88BA6NC98 1476 aa36.59■■■■□ 3.45
R3HCC1-210ENST00000625275 URB2Q14146 1524 aaKnown RBP36.49■■■■□ 3.43
R3HCC1-210ENST00000625275 TOPBP1Q92547 1522 aa36.16■■■■□ 3.38
R3HCC1-210ENST00000625275 ABCC8Q09428 1581 aa36.1■■■■□ 3.37
R3HCC1-210ENST00000625275 DNMBPQ6XZF7 1577 aa36.1■■■■□ 3.37
R3HCC1-210ENST00000625275 IFT140Q96RY7 1462 aa36.07■■■■□ 3.36
R3HCC1-210ENST00000625275 ZNF608Q9ULD9 1512 aaPredicted RBP35.96■■■■□ 3.35
R3HCC1-210ENST00000625275 EIF4G3O43432 1585 aaKnown RBP35.9■■■■□ 3.34
R3HCC1-210ENST00000625275 TARBP1Q13395 1621 aaKnown RBP35.87■■■■□ 3.33
R3HCC1-210ENST00000625275 OSCARQ8IYS5 282 aa35.82■■■■□ 3.32
R3HCC1-210ENST00000625275 POLA1P09884 1462 aaPredicted RBP35.8■■■■□ 3.32
R3HCC1-210ENST00000625275 SUPT5HO00267 1087 aaKnown RBP35.7■■■■□ 3.31
R3HCC1-210ENST00000625275 CUX1P39880 1505 aa35.65■■■■□ 3.3
R3HCC1-210ENST00000625275 AQRO60306 1485 aaKnown RBP eCLIP35.64■■■■□ 3.34e-7■■■■□ 19.6
R3HCC1-210ENST00000625275 CHD1O14646 1710 aa35.64■■■■□ 3.3
R3HCC1-210ENST00000625275 FGD5Q6ZNL6 1462 aa35.62■■■■□ 3.29
R3HCC1-210ENST00000625275 RAD54L2Q9Y4B4 1467 aa35.62■■■■□ 3.29
R3HCC1-210ENST00000625275 TRIM41Q8WV44 630 aa35.61■■■■□ 3.29
R3HCC1-210ENST00000625275 SOGA1O94964 1423 aa35.58■■■■□ 3.29
R3HCC1-210ENST00000625275 WDR97A6NE52 1622 aa35.57■■■■□ 3.28
R3HCC1-210ENST00000625275 RIMBP3CA6NJZ7 1639 aa35.51■■■■□ 3.27
R3HCC1-210ENST00000625275 RIMBP3BA6NNM3 1639 aa35.51■■■■□ 3.27
R3HCC1-210ENST00000625275 RIMBP3Q9UFD9 1639 aa35.51■■■■□ 3.27
R3HCC1-210ENST00000625275 TDRD9Q8NDG6 1382 aaKnown RBP35.44■■■■□ 3.26
R3HCC1-210ENST00000625275 ARHGEF11O15085 1522 aa35.38■■■■□ 3.25
R3HCC1-210ENST00000625275 SNAPC4Q5SXM2 1469 aa35.34■■■■□ 3.25
R3HCC1-210ENST00000625275 PBRM1Q86U86 1689 aa35.34■■■■□ 3.25
R3HCC1-210ENST00000625275 GRIN2BQ13224 1484 aa35.29■■■■□ 3.24
R3HCC1-210ENST00000625275 MAGI1Q96QZ7 1491 aaPredicted RBP35.29■■■■□ 3.24
R3HCC1-210ENST00000625275 FBLN2P98095 1184 aa35.29■■■■□ 3.24
R3HCC1-210ENST00000625275 BIVM-ERCC5R4GMW8 1640 aa35.25■■■■□ 3.23
R3HCC1-210ENST00000625275 ABCA5Q8WWZ7 1642 aa35.24■■■■□ 3.23
R3HCC1-210ENST00000625275 ABCA10Q8WWZ4 1543 aa35.24■■■■□ 3.23
R3HCC1-210ENST00000625275 GAPVD1Q14C86 1478 aa35.2■■■■□ 3.23
R3HCC1-210ENST00000625275 TOP2BQ02880 1626 aa35.2■■■■□ 3.23
R3HCC1-210ENST00000625275 SYNJ1O43426 1573 aa35.16■■■■□ 3.22
R3HCC1-210ENST00000625275 SYNJ2O15056 1496 aa35.15■■■■□ 3.22
R3HCC1-210ENST00000625275 CLASP1Q7Z460 1538 aa35.14■■■■□ 3.22
R3HCC1-210ENST00000625275 WRNQ14191 1432 aaPredicted RBP eCLIP35.13■■■■□ 3.21
R3HCC1-210ENST00000625275 CHMP7Q8WUX9 453 aaPredicted RBP35.09■■■■□ 3.21
R3HCC1-210ENST00000625275 ARAP1Q96P48 1450 aa35.03■■■■□ 3.2
R3HCC1-210ENST00000625275 CYB5RLQ6IPT4 315 aa34.95■■■■□ 3.19
R3HCC1-210ENST00000625275 ADAMTS12P58397 1594 aa34.95■■■■□ 3.18
R3HCC1-210ENST00000625275 GRIN2AQ12879 1464 aa34.85■■■■□ 3.17
R3HCC1-210ENST00000625275 ERICH3Q5RHP9 1530 aa34.83■■■■□ 3.17
R3HCC1-210ENST00000625275 CEP170Q5SW79 1584 aa34.75■■■■□ 3.15
R3HCC1-210ENST00000625275 FHAD1B1AJZ9 1412 aa34.75■■■■□ 3.15
R3HCC1-210ENST00000625275 NUP160Q12769 1436 aa34.7■■■■□ 3.15
R3HCC1-210ENST00000625275 SHROOM2Q13796 1616 aa34.62■■■■□ 3.13
R3HCC1-210ENST00000625275 ERCC6L2Q5T890 1561 aa34.58■■■■□ 3.13
R3HCC1-210ENST00000625275 TRHP20396 242 aaPredicted RBP34.47■■■■□ 3.11
R3HCC1-210ENST00000625275 CUL7Q14999 1698 aa34.46■■■■□ 3.11
R3HCC1-210ENST00000625275 RUSC2Q8N2Y8 1516 aa34.45■■■■□ 3.11
R3HCC1-210ENST00000625275 KIF27Q86VH2 1401 aa34.43■■■■□ 3.1
R3HCC1-210ENST00000625275 IGF1RP08069 1367 aa34.32■■■■□ 3.08
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms