Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CHMP1AQ9HD42 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CHMP1AQ9HD42 EBPL-202ENST00000378268 680 ntTSL 3 BASIC21.76■■□□□ 1.07
CHMP1AQ9HD42 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC21.76■■□□□ 1.07
CHMP1AQ9HD42 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CHMP1AQ9HD42 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CHMP1AQ9HD42 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CHMP1AQ9HD42 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CHMP1AQ9HD42 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
CHMP1AQ9HD42 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
CHMP1AQ9HD42 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CHMP1AQ9HD42 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC21.74■■□□□ 1.07
CHMP1AQ9HD42 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC21.74■■□□□ 1.07
CHMP1AQ9HD42 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CHMP1AQ9HD42 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
CHMP1AQ9HD42 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
CHMP1AQ9HD42 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CHMP1AQ9HD42 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CHMP1AQ9HD42 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC21.72■■□□□ 1.07
CHMP1AQ9HD42 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
CHMP1AQ9HD42 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
CHMP1AQ9HD42 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC21.72■■□□□ 1.07
CHMP1AQ9HD42 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC21.72■■□□□ 1.07
CHMP1AQ9HD42 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC21.72■■□□□ 1.07
CHMP1AQ9HD42 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC21.72■■□□□ 1.07
CHMP1AQ9HD42 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
CHMP1AQ9HD42 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CHMP1AQ9HD42 DENR-202ENST00000455982 1052 ntTSL 5 BASIC21.7■■□□□ 1.06
CHMP1AQ9HD42 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
CHMP1AQ9HD42 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
CHMP1AQ9HD42 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC21.7■■□□□ 1.06
CHMP1AQ9HD42 AL391121.1-201ENST00000607967 1349 ntBASIC21.69■■□□□ 1.06
CHMP1AQ9HD42 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
CHMP1AQ9HD42 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
CHMP1AQ9HD42 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CHMP1AQ9HD42 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CHMP1AQ9HD42 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CHMP1AQ9HD42 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC21.68■■□□□ 1.06
CHMP1AQ9HD42 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CHMP1AQ9HD42 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
CHMP1AQ9HD42 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CHMP1AQ9HD42 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
CHMP1AQ9HD42 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
CHMP1AQ9HD42 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CHMP1AQ9HD42 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CHMP1AQ9HD42 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CHMP1AQ9HD42 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC21.67■■□□□ 1.06
CHMP1AQ9HD42 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CHMP1AQ9HD42 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CHMP1AQ9HD42 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CHMP1AQ9HD42 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
CHMP1AQ9HD42 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CHMP1AQ9HD42 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC21.66■■□□□ 1.06
CHMP1AQ9HD42 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC21.66■■□□□ 1.06
CHMP1AQ9HD42 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CHMP1AQ9HD42 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC21.66■■□□□ 1.06
CHMP1AQ9HD42 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
CHMP1AQ9HD42 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CHMP1AQ9HD42 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.06
CHMP1AQ9HD42 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CHMP1AQ9HD42 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
CHMP1AQ9HD42 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CHMP1AQ9HD42 AC097358.2-201ENST00000607541 1159 ntBASIC21.63■■□□□ 1.05
CHMP1AQ9HD42 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC21.63■■□□□ 1.05
CHMP1AQ9HD42 AP004833.2-201ENST00000532228 1454 ntBASIC21.63■■□□□ 1.05
CHMP1AQ9HD42 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CHMP1AQ9HD42 AC127502.1-201ENST00000399971 1502 ntBASIC21.62■■□□□ 1.05
CHMP1AQ9HD42 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CHMP1AQ9HD42 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
CHMP1AQ9HD42 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
CHMP1AQ9HD42 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC21.61■■□□□ 1.05
CHMP1AQ9HD42 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC21.61■■□□□ 1.05
CHMP1AQ9HD42 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC21.61■■□□□ 1.05
CHMP1AQ9HD42 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CHMP1AQ9HD42 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CHMP1AQ9HD42 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC21.61■■□□□ 1.05
CHMP1AQ9HD42 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CHMP1AQ9HD42 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CHMP1AQ9HD42 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC21.6■■□□□ 1.05
CHMP1AQ9HD42 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CHMP1AQ9HD42 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CHMP1AQ9HD42 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CHMP1AQ9HD42 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CHMP1AQ9HD42 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC21.59■■□□□ 1.05
CHMP1AQ9HD42 CAHM-201ENST00000604200 896 ntBASIC21.59■■□□□ 1.05
CHMP1AQ9HD42 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
CHMP1AQ9HD42 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CHMP1AQ9HD42 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CHMP1AQ9HD42 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC21.58■■□□□ 1.05
CHMP1AQ9HD42 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.05
CHMP1AQ9HD42 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.05
CHMP1AQ9HD42 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CHMP1AQ9HD42 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.04
CHMP1AQ9HD42 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CHMP1AQ9HD42 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CHMP1AQ9HD42 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CHMP1AQ9HD42 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CHMP1AQ9HD42 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CHMP1AQ9HD42 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CHMP1AQ9HD42 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC21.56■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 106.8 ms