Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
PRKNO60260 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC23.92■■□□□ 1.42
PRKNO60260 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC23.92■■□□□ 1.42
PRKNO60260 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
PRKNO60260 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC23.92■■□□□ 1.42
PRKNO60260 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC23.91■■□□□ 1.42
PRKNO60260 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC23.91■■□□□ 1.42
PRKNO60260 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
PRKNO60260 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC23.91■■□□□ 1.42
PRKNO60260 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC23.9■■□□□ 1.42
PRKNO60260 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC23.9■■□□□ 1.42
PRKNO60260 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC23.9■■□□□ 1.42
PRKNO60260 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC23.9■■□□□ 1.42
PRKNO60260 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
PRKNO60260 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC23.9■■□□□ 1.42
PRKNO60260 MBP-237ENST00000579129 1052 ntTSL 5 BASIC23.9■■□□□ 1.42
PRKNO60260 CR559946.2-201ENST00000623684 991 ntBASIC23.9■■□□□ 1.42
PRKNO60260 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC23.9■■□□□ 1.42
PRKNO60260 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC23.9■■□□□ 1.42
PRKNO60260 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC23.89■■□□□ 1.42
PRKNO60260 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
PRKNO60260 MACF1-219ENST00000484793 834 ntTSL 2 BASIC23.89■■□□□ 1.41
PRKNO60260 RPS2-202ENST00000526522 924 ntTSL 2 BASIC23.89■■□□□ 1.41
PRKNO60260 MIR3648-2-201ENST00000581792 180 ntBASIC23.89■■□□□ 1.41
PRKNO60260 MIR3648-1-201ENST00000615959 180 ntBASIC23.89■■□□□ 1.41
PRKNO60260 GDI1-215ENST00000630693 786 ntTSL 4 BASIC23.89■■□□□ 1.41
PRKNO60260 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
PRKNO60260 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
PRKNO60260 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC23.88■■□□□ 1.41
PRKNO60260 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC23.88■■□□□ 1.41
PRKNO60260 CHML-204ENST00000638121 920 ntTSL 2 BASIC23.88■■□□□ 1.41
PRKNO60260 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
PRKNO60260 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC23.87■■□□□ 1.41
PRKNO60260 HLA-V-202ENST00000446817 847 ntBASIC23.87■■□□□ 1.41
PRKNO60260 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC23.87■■□□□ 1.41
PRKNO60260 DUX4L13-201ENST00000554103 1267 ntBASIC23.87■■□□□ 1.41
PRKNO60260 AC016575.1-201ENST00000607026 382 ntBASIC23.87■■□□□ 1.41
PRKNO60260 DUX4L15-201ENST00000611059 1267 ntBASIC23.87■■□□□ 1.41
PRKNO60260 DUX4L23-201ENST00000615195 1269 ntBASIC23.87■■□□□ 1.41
PRKNO60260 DUX4L24-201ENST00000617576 1269 ntBASIC23.87■■□□□ 1.41
PRKNO60260 DUX4L22-201ENST00000618238 1269 ntBASIC23.87■■□□□ 1.41
PRKNO60260 DUX4L20-201ENST00000619712 1269 ntBASIC23.87■■□□□ 1.41
PRKNO60260 DUX4L21-201ENST00000622058 1269 ntBASIC23.87■■□□□ 1.41
PRKNO60260 DUX4L10-201ENST00000622460 1267 ntBASIC23.87■■□□□ 1.41
PRKNO60260 DUX4L25-201ENST00000624915 1269 ntBASIC23.87■■□□□ 1.41
PRKNO60260 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC23.87■■□□□ 1.41
PRKNO60260 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC23.87■■□□□ 1.41
PRKNO60260 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
PRKNO60260 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC23.87■■□□□ 1.41
PRKNO60260 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
PRKNO60260 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
PRKNO60260 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
PRKNO60260 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
PRKNO60260 SHF-206ENST00000560471 2499 ntTSL 5 BASIC23.84■■□□□ 1.41
PRKNO60260 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
PRKNO60260 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC23.84■■□□□ 1.41
PRKNO60260 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
PRKNO60260 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC23.84■■□□□ 1.41
PRKNO60260 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC23.84■■□□□ 1.41
PRKNO60260 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC23.84■■□□□ 1.41
PRKNO60260 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
PRKNO60260 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
PRKNO60260 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC23.83■■□□□ 1.41
PRKNO60260 AGPS-202ENST00000409888 815 ntTSL 4 BASIC23.83■■□□□ 1.41
PRKNO60260 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC23.83■■□□□ 1.41
PRKNO60260 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
PRKNO60260 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC23.82■■□□□ 1.4
PRKNO60260 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC23.82■■□□□ 1.4
PRKNO60260 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
PRKNO60260 AC100797.4-201ENST00000631653 1827 ntBASIC23.82■■□□□ 1.4
PRKNO60260 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
PRKNO60260 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
PRKNO60260 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC23.81■■□□□ 1.4
PRKNO60260 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
PRKNO60260 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
PRKNO60260 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC23.8■■□□□ 1.4
PRKNO60260 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
PRKNO60260 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
PRKNO60260 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
PRKNO60260 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC23.78■■□□□ 1.4
PRKNO60260 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
PRKNO60260 HES6-205ENST00000409356 528 ntTSL 2 BASIC23.78■■□□□ 1.4
PRKNO60260 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
PRKNO60260 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
PRKNO60260 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC23.77■■□□□ 1.4
PRKNO60260 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
PRKNO60260 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
PRKNO60260 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
PRKNO60260 MIR639-201ENST00000384974 98 ntBASIC23.76■■□□□ 1.39
PRKNO60260 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
PRKNO60260 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC23.76■■□□□ 1.39
PRKNO60260 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC23.75■■□□□ 1.39
PRKNO60260 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC23.75■■□□□ 1.39
PRKNO60260 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
PRKNO60260 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC23.75■■□□□ 1.39
PRKNO60260 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
PRKNO60260 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC23.75■■□□□ 1.39
PRKNO60260 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC23.75■■□□□ 1.39
PRKNO60260 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC23.74■■□□□ 1.39
PRKNO60260 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC23.74■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms