Protein–RNA interactions for Protein: P53618

COPB1, Coatomer subunit beta, humanhuman

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1P53618 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
COPB1P53618 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
COPB1P53618 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC21.53■■□□□ 1.04
COPB1P53618 HES2-205ENST00000487437 968 ntTSL 3 BASIC21.53■■□□□ 1.04
COPB1P53618 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC21.53■■□□□ 1.04
COPB1P53618 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC21.53■■□□□ 1.04
COPB1P53618 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
COPB1P53618 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC21.53■■□□□ 1.04
COPB1P53618 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC21.53■■□□□ 1.04
COPB1P53618 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
COPB1P53618 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC21.53■■□□□ 1.04
COPB1P53618 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
COPB1P53618 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
COPB1P53618 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
COPB1P53618 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
COPB1P53618 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
COPB1P53618 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
COPB1P53618 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
COPB1P53618 MOK-233ENST00000524214 1539 ntTSL 2 BASIC21.52■■□□□ 1.04
COPB1P53618 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
COPB1P53618 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC21.52■■□□□ 1.04
COPB1P53618 AL162430.1-201ENST00000480705 870 ntBASIC21.52■■□□□ 1.04
COPB1P53618 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
COPB1P53618 MDK-213ENST00000617138 635 ntTSL 2 BASIC21.52■■□□□ 1.04
COPB1P53618 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
COPB1P53618 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
COPB1P53618 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
COPB1P53618 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
COPB1P53618 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
COPB1P53618 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
COPB1P53618 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
COPB1P53618 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC21.52■■□□□ 1.03
COPB1P53618 AC018553.1-201ENST00000616682 1458 ntBASIC21.52■■□□□ 1.03
COPB1P53618 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
COPB1P53618 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
COPB1P53618 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
COPB1P53618 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC21.51■■□□□ 1.03
COPB1P53618 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
COPB1P53618 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
COPB1P53618 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC21.51■■□□□ 1.03
COPB1P53618 AC093503.3-201ENST00000624917 2352 ntBASIC21.51■■□□□ 1.03
COPB1P53618 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
COPB1P53618 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC21.51■■□□□ 1.03
COPB1P53618 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
COPB1P53618 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC21.51■■□□□ 1.03
COPB1P53618 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC21.51■■□□□ 1.03
COPB1P53618 SERP1-205ENST00000487153 657 ntTSL 4 BASIC21.51■■□□□ 1.03
COPB1P53618 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
COPB1P53618 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
COPB1P53618 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC21.51■■□□□ 1.03
COPB1P53618 AC005181.1-201ENST00000604782 1256 ntBASIC21.51■■□□□ 1.03
COPB1P53618 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC21.51■■□□□ 1.03
COPB1P53618 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
COPB1P53618 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC21.51■■□□□ 1.03
COPB1P53618 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
COPB1P53618 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC21.51■■□□□ 1.03
COPB1P53618 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
COPB1P53618 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC21.5■■□□□ 1.03
COPB1P53618 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC21.5■■□□□ 1.03
COPB1P53618 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COPB1P53618 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
COPB1P53618 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
COPB1P53618 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
COPB1P53618 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC21.5■■□□□ 1.03
COPB1P53618 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC21.5■■□□□ 1.03
COPB1P53618 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
COPB1P53618 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
COPB1P53618 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
COPB1P53618 AC004911.1-201ENST00000416316 871 ntBASIC21.5■■□□□ 1.03
COPB1P53618 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC21.5■■□□□ 1.03
COPB1P53618 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
COPB1P53618 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
COPB1P53618 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC21.5■■□□□ 1.03
COPB1P53618 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
COPB1P53618 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COPB1P53618 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC21.5■■□□□ 1.03
COPB1P53618 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COPB1P53618 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
COPB1P53618 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC21.5■■□□□ 1.03
COPB1P53618 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
COPB1P53618 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC21.5■■□□□ 1.03
COPB1P53618 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
COPB1P53618 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
COPB1P53618 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COPB1P53618 LINC01465-201ENST00000408887 1940 ntBASIC21.49■■□□□ 1.03
COPB1P53618 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
COPB1P53618 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
COPB1P53618 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC21.49■■□□□ 1.03
COPB1P53618 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC21.49■■□□□ 1.03
COPB1P53618 GPX1P1-201ENST00000388829 606 ntBASIC21.49■■□□□ 1.03
COPB1P53618 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
COPB1P53618 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC21.49■■□□□ 1.03
COPB1P53618 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COPB1P53618 ISCU-212ENST00000547005 795 ntTSL 3 BASIC21.49■■□□□ 1.03
COPB1P53618 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC21.49■■□□□ 1.03
COPB1P53618 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC21.49■■□□□ 1.03
COPB1P53618 ANKRD20A6P-201ENST00000618763 204 ntBASIC21.49■■□□□ 1.03
COPB1P53618 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC21.49■■□□□ 1.03
COPB1P53618 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC21.49■■□□□ 1.03
COPB1P53618 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC21.49■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms