Protein–RNA interactions for Protein: S4R434

TMEM56-RWDD3, TMEM56-RWDD3 readthrough, humanhuman

Predictions only

Length 201 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM56-RWDD3S4R434 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
TMEM56-RWDD3S4R434 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
TMEM56-RWDD3S4R434 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
TMEM56-RWDD3S4R434 AP002365.1-201ENST00000603448 772 ntBASIC21.21■□□□□ 0.99
TMEM56-RWDD3S4R434 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
TMEM56-RWDD3S4R434 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
TMEM56-RWDD3S4R434 PROC-203ENST00000409048 1586 ntTSL 5 BASIC21.2■□□□□ 0.98
TMEM56-RWDD3S4R434 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TMEM56-RWDD3S4R434 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC21.19■□□□□ 0.98
TMEM56-RWDD3S4R434 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
TMEM56-RWDD3S4R434 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
TMEM56-RWDD3S4R434 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
TMEM56-RWDD3S4R434 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
TMEM56-RWDD3S4R434 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
TMEM56-RWDD3S4R434 SHF-207ENST00000560540 2062 ntTSL 5 BASIC21.18■□□□□ 0.98
TMEM56-RWDD3S4R434 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
TMEM56-RWDD3S4R434 AP004833.2-201ENST00000532228 1454 ntBASIC21.18■□□□□ 0.98
TMEM56-RWDD3S4R434 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TMEM56-RWDD3S4R434 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC21.17■□□□□ 0.98
TMEM56-RWDD3S4R434 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
TMEM56-RWDD3S4R434 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
TMEM56-RWDD3S4R434 SHF-208ENST00000560734 1731 ntTSL 3 BASIC21.17■□□□□ 0.98
TMEM56-RWDD3S4R434 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
TMEM56-RWDD3S4R434 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
TMEM56-RWDD3S4R434 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TMEM56-RWDD3S4R434 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC21.15■□□□□ 0.98
TMEM56-RWDD3S4R434 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
TMEM56-RWDD3S4R434 AL133380.1-201ENST00000506013 324 ntBASIC21.15■□□□□ 0.98
TMEM56-RWDD3S4R434 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TMEM56-RWDD3S4R434 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
TMEM56-RWDD3S4R434 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
TMEM56-RWDD3S4R434 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC21.14■□□□□ 0.97
TMEM56-RWDD3S4R434 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
TMEM56-RWDD3S4R434 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TMEM56-RWDD3S4R434 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TMEM56-RWDD3S4R434 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TMEM56-RWDD3S4R434 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TMEM56-RWDD3S4R434 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC21.13■□□□□ 0.97
TMEM56-RWDD3S4R434 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
TMEM56-RWDD3S4R434 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
TMEM56-RWDD3S4R434 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC21.12■□□□□ 0.97
TMEM56-RWDD3S4R434 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC21.12■□□□□ 0.97
TMEM56-RWDD3S4R434 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
TMEM56-RWDD3S4R434 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC21.11■□□□□ 0.97
TMEM56-RWDD3S4R434 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
TMEM56-RWDD3S4R434 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TMEM56-RWDD3S4R434 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TMEM56-RWDD3S4R434 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TMEM56-RWDD3S4R434 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC21.1■□□□□ 0.97
TMEM56-RWDD3S4R434 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC21.1■□□□□ 0.97
TMEM56-RWDD3S4R434 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
TMEM56-RWDD3S4R434 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC21.09■□□□□ 0.97
TMEM56-RWDD3S4R434 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TMEM56-RWDD3S4R434 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
TMEM56-RWDD3S4R434 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC21.09■□□□□ 0.97
TMEM56-RWDD3S4R434 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TMEM56-RWDD3S4R434 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
TMEM56-RWDD3S4R434 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC21.08■□□□□ 0.97
TMEM56-RWDD3S4R434 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
TMEM56-RWDD3S4R434 KLF16-203ENST00000592313 508 ntTSL 3 BASIC21.08■□□□□ 0.97
TMEM56-RWDD3S4R434 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
TMEM56-RWDD3S4R434 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC21.07■□□□□ 0.96
TMEM56-RWDD3S4R434 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
TMEM56-RWDD3S4R434 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TMEM56-RWDD3S4R434 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
TMEM56-RWDD3S4R434 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TMEM56-RWDD3S4R434 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TMEM56-RWDD3S4R434 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
TMEM56-RWDD3S4R434 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TMEM56-RWDD3S4R434 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC21.05■□□□□ 0.96
TMEM56-RWDD3S4R434 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
TMEM56-RWDD3S4R434 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
TMEM56-RWDD3S4R434 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
TMEM56-RWDD3S4R434 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC21.05■□□□□ 0.96
TMEM56-RWDD3S4R434 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
TMEM56-RWDD3S4R434 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TMEM56-RWDD3S4R434 LINC01003-201ENST00000564834 1764 ntBASIC21.04■□□□□ 0.96
TMEM56-RWDD3S4R434 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC21.04■□□□□ 0.96
TMEM56-RWDD3S4R434 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC21.04■□□□□ 0.96
TMEM56-RWDD3S4R434 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC21.04■□□□□ 0.96
TMEM56-RWDD3S4R434 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC21.02■□□□□ 0.96
TMEM56-RWDD3S4R434 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.95
TMEM56-RWDD3S4R434 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC21.01■□□□□ 0.95
TMEM56-RWDD3S4R434 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
TMEM56-RWDD3S4R434 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
TMEM56-RWDD3S4R434 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
TMEM56-RWDD3S4R434 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
TMEM56-RWDD3S4R434 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
TMEM56-RWDD3S4R434 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TMEM56-RWDD3S4R434 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TMEM56-RWDD3S4R434 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TMEM56-RWDD3S4R434 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
TMEM56-RWDD3S4R434 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TMEM56-RWDD3S4R434 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC21■□□□□ 0.95
TMEM56-RWDD3S4R434 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC21■□□□□ 0.95
TMEM56-RWDD3S4R434 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
TMEM56-RWDD3S4R434 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
TMEM56-RWDD3S4R434 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC21■□□□□ 0.95
TMEM56-RWDD3S4R434 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
TMEM56-RWDD3S4R434 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC20.99■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms