Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
HDDC3Q8N4P3 DUX4L13-201ENST00000554103 1267 ntBASIC26.24■■□□□ 1.79
HDDC3Q8N4P3 DUX4L15-201ENST00000611059 1267 ntBASIC26.24■■□□□ 1.79
HDDC3Q8N4P3 DUX4L23-201ENST00000615195 1269 ntBASIC26.24■■□□□ 1.79
HDDC3Q8N4P3 DUX4L24-201ENST00000617576 1269 ntBASIC26.24■■□□□ 1.79
HDDC3Q8N4P3 DUX4L22-201ENST00000618238 1269 ntBASIC26.24■■□□□ 1.79
HDDC3Q8N4P3 DUX4L20-201ENST00000619712 1269 ntBASIC26.24■■□□□ 1.79
HDDC3Q8N4P3 DUX4L21-201ENST00000622058 1269 ntBASIC26.24■■□□□ 1.79
HDDC3Q8N4P3 DUX4L10-201ENST00000622460 1267 ntBASIC26.24■■□□□ 1.79
HDDC3Q8N4P3 DUX4L25-201ENST00000624915 1269 ntBASIC26.24■■□□□ 1.79
HDDC3Q8N4P3 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
HDDC3Q8N4P3 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC26.23■■□□□ 1.79
HDDC3Q8N4P3 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
HDDC3Q8N4P3 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC26.22■■□□□ 1.79
HDDC3Q8N4P3 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
HDDC3Q8N4P3 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
HDDC3Q8N4P3 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC26.21■■□□□ 1.79
HDDC3Q8N4P3 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC26.21■■□□□ 1.79
HDDC3Q8N4P3 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC26.21■■□□□ 1.79
HDDC3Q8N4P3 CHML-204ENST00000638121 920 ntTSL 2 BASIC26.2■■□□□ 1.78
HDDC3Q8N4P3 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
HDDC3Q8N4P3 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
HDDC3Q8N4P3 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC26.18■■□□□ 1.78
HDDC3Q8N4P3 LINC00273-201ENST00000539813 1452 ntBASIC26.18■■□□□ 1.78
HDDC3Q8N4P3 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC26.18■■□□□ 1.78
HDDC3Q8N4P3 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
HDDC3Q8N4P3 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC26.17■■□□□ 1.78
HDDC3Q8N4P3 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC26.17■■□□□ 1.78
HDDC3Q8N4P3 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC26.17■■□□□ 1.78
HDDC3Q8N4P3 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC26.17■■□□□ 1.78
HDDC3Q8N4P3 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC26.17■■□□□ 1.78
HDDC3Q8N4P3 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC26.17■■□□□ 1.78
HDDC3Q8N4P3 AL135925.1-201ENST00000605920 1701 ntBASIC26.17■■□□□ 1.78
HDDC3Q8N4P3 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC26.16■■□□□ 1.78
HDDC3Q8N4P3 METRNL-202ENST00000570778 967 ntTSL 5 BASIC26.16■■□□□ 1.78
HDDC3Q8N4P3 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC26.16■■□□□ 1.78
HDDC3Q8N4P3 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
HDDC3Q8N4P3 HES6-205ENST00000409356 528 ntTSL 2 BASIC26.15■■□□□ 1.78
HDDC3Q8N4P3 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC26.15■■□□□ 1.78
HDDC3Q8N4P3 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC26.14■■□□□ 1.78
HDDC3Q8N4P3 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC26.14■■□□□ 1.77
HDDC3Q8N4P3 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC26.14■■□□□ 1.77
HDDC3Q8N4P3 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
HDDC3Q8N4P3 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
HDDC3Q8N4P3 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC26.12■■□□□ 1.77
HDDC3Q8N4P3 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
HDDC3Q8N4P3 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC26.12■■□□□ 1.77
HDDC3Q8N4P3 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
HDDC3Q8N4P3 AC127502.1-201ENST00000399971 1502 ntBASIC26.11■■□□□ 1.77
HDDC3Q8N4P3 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC26.11■■□□□ 1.77
HDDC3Q8N4P3 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC26.1■■□□□ 1.77
HDDC3Q8N4P3 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC26.1■■□□□ 1.77
HDDC3Q8N4P3 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC26.08■■□□□ 1.77
HDDC3Q8N4P3 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC26.07■■□□□ 1.76
HDDC3Q8N4P3 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
HDDC3Q8N4P3 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC26.06■■□□□ 1.76
HDDC3Q8N4P3 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
HDDC3Q8N4P3 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
HDDC3Q8N4P3 CHST11-202ENST00000546689 756 ntTSL 2 BASIC26.06■■□□□ 1.76
HDDC3Q8N4P3 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC26.06■■□□□ 1.76
HDDC3Q8N4P3 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC26.06■■□□□ 1.76
HDDC3Q8N4P3 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC26.05■■□□□ 1.76
HDDC3Q8N4P3 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC26.04■■□□□ 1.76
HDDC3Q8N4P3 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC26.03■■□□□ 1.76
HDDC3Q8N4P3 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
HDDC3Q8N4P3 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC26.03■■□□□ 1.76
HDDC3Q8N4P3 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC26.02■■□□□ 1.76
HDDC3Q8N4P3 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC26.01■■□□□ 1.75
HDDC3Q8N4P3 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC26.01■■□□□ 1.75
HDDC3Q8N4P3 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
HDDC3Q8N4P3 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC26■■□□□ 1.75
HDDC3Q8N4P3 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC26■■□□□ 1.75
HDDC3Q8N4P3 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC26■■□□□ 1.75
HDDC3Q8N4P3 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC26■■□□□ 1.75
HDDC3Q8N4P3 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC26■■□□□ 1.75
HDDC3Q8N4P3 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC26■■□□□ 1.75
HDDC3Q8N4P3 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC26■■□□□ 1.75
HDDC3Q8N4P3 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC26■■□□□ 1.75
HDDC3Q8N4P3 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC26■■□□□ 1.75
HDDC3Q8N4P3 RARRES2P2-201ENST00000394842 485 ntBASIC25.99■■□□□ 1.75
HDDC3Q8N4P3 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC25.99■■□□□ 1.75
HDDC3Q8N4P3 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
HDDC3Q8N4P3 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC25.98■■□□□ 1.75
HDDC3Q8N4P3 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
HDDC3Q8N4P3 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC25.97■■□□□ 1.75
HDDC3Q8N4P3 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC25.97■■□□□ 1.75
HDDC3Q8N4P3 ABHD17AP5-201ENST00000580133 923 ntBASIC25.97■■□□□ 1.75
HDDC3Q8N4P3 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC25.97■■□□□ 1.75
HDDC3Q8N4P3 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
HDDC3Q8N4P3 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC25.97■■□□□ 1.75
HDDC3Q8N4P3 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC25.96■■□□□ 1.75
HDDC3Q8N4P3 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC25.96■■□□□ 1.75
HDDC3Q8N4P3 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC25.96■■□□□ 1.75
HDDC3Q8N4P3 AC135983.2-203ENST00000454486 1613 ntBASIC25.96■■□□□ 1.75
HDDC3Q8N4P3 WHAMMP2-203ENST00000563942 1603 ntBASIC25.96■■□□□ 1.75
HDDC3Q8N4P3 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC25.95■■□□□ 1.74
HDDC3Q8N4P3 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC25.94■■□□□ 1.74
HDDC3Q8N4P3 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC25.93■■□□□ 1.74
HDDC3Q8N4P3 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC25.93■■□□□ 1.74
HDDC3Q8N4P3 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
Retrieved 100 of 98,524 protein–RNA pairs in 669 ms