Protein–RNA interactions for Protein: O60832

DKC1, H/ACA ribonucleoprotein complex subunit 4, humanhuman

Known RBP eCLIP

Length 514 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKC1O60832 TACC1-222ENST00000522752 944 ntTSL 1 (best)15.07■□□□□ 03e-11■■■■■ 75.5
DKC1O60832 TACC1-208ENST00000520340 1976 ntTSL 5 BASIC14.49□□□□□ -0.093e-11■■■■■ 75.5
DKC1O60832 TACC1-223ENST00000522904 1724 ntTSL 514.24□□□□□ -0.133e-11■■■■■ 75.5
DKC1O60832 TACC1-204ENST00000518415 3011 ntTSL 1 (best) BASIC10.37□□□□□ -0.753e-11■■■■■ 75.5
DKC1O60832 TACC1-210ENST00000520615 5509 ntTSL 2 BASIC9.32□□□□□ -0.923e-11■■■■■ 75.5
DKC1O60832 TACC1-207ENST00000519416 5510 ntTSL 1 (best) BASIC9.32□□□□□ -0.923e-11■■■■■ 75.5
DKC1O60832 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC24.46■■□□□ 1.519e-17■■■■■ 75.1
DKC1O60832 RAB11FIP3-203ENST00000434585 3550 ntAPPRIS ALT2 TSL 513.07□□□□□ -0.329e-17■■■■■ 75.1
DKC1O60832 CMIP-206ENST00000565029 1559 ntTSL 1 (best)16.79■□□□□ 0.283e-7■■■■■ 74.4
DKC1O60832 KIZ-204ENST00000451772 536 ntTSL 39.76□□□□□ -0.851e-23■■■■■ 74.1
DKC1O60832 KIZ-214ENST00000621366 1397 ntAPPRIS ALT2 TSL 1 (best)3.96□□□□□ -1.781e-23■■■■■ 74.1
DKC1O60832 KIZ-201ENST00000419359 517 ntTSL 22.56□□□□□ -21e-23■■■■■ 74.1
DKC1O60832 PVT1-217ENST00000523190 443 ntTSL 37.46□□□□□ -1.229e-8■■■■■ 74
DKC1O60832 PVT1-214ENST00000522875 922 ntTSL 5 BASIC7.44□□□□□ -1.229e-8■■■■■ 74
DKC1O60832 PVT1-211ENST00000521600 408 ntTSL 24.25□□□□□ -1.739e-8■■■■■ 74
DKC1O60832 PVT1-202ENST00000512617 383 ntTSL 33.82□□□□□ -1.89e-8■■■■■ 74
DKC1O60832 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC17.19■□□□□ 0.346e-20■■■■■ 73.8
DKC1O60832 DNAJC16-203ENST00000375849 3446 ntTSL 1 (best) BASIC10.45□□□□□ -0.746e-20■■■■■ 73.8
DKC1O60832 DNAJC16-202ENST00000375847 6069 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.276e-20■■■■■ 73.8
DKC1O60832 DNAJC16-205ENST00000475133 6299 ntTSL 1 (best)6.81□□□□□ -1.326e-20■■■■■ 73.8
DKC1O60832 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC5.68□□□□□ -1.56e-20■■■■■ 73.8
DKC1O60832 PRDM16-204ENST00000463591 384 ntTSL 522.94■■□□□ 1.264e-7■■■■■ 73.8
DKC1O60832 IGF2BP1-206ENST00000515586 768 ntTSL 316.05■□□□□ 0.162e-20■■■■■ 73.8
DKC1O60832 IGF2BP1-201ENST00000290341 8274 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.032e-20■■■■■ 73.8
DKC1O60832 IGF2BP1-202ENST00000431824 1317 ntTSL 1 (best) BASIC13.66□□□□□ -0.222e-20■■■■■ 73.8
DKC1O60832 MBP-237ENST00000579129 1052 ntTSL 5 BASIC28.7■■■□□ 2.181e-6■■■■■ 73.5
DKC1O60832 MBP-219ENST00000487778 913 ntTSL 321.25■□□□□ 0.991e-6■■■■■ 73.5
DKC1O60832 MBP-202ENST00000355994 2772 ntTSL 5 BASIC16.72■□□□□ 0.271e-6■■■■■ 73.5
DKC1O60832 MBP-205ENST00000397860 4844 ntTSL 1 (best) BASIC14.93□□□□□ -0.021e-6■■■■■ 73.5
DKC1O60832 MBP-225ENST00000497479 889 ntTSL 313.75□□□□□ -0.211e-6■■■■■ 73.5
DKC1O60832 MBP-221ENST00000490754 531 ntTSL 49.86□□□□□ -0.831e-6■■■■■ 73.5
DKC1O60832 MBP-206ENST00000397863 4800 ntTSL 3 BASIC9.62□□□□□ -0.871e-6■■■■■ 73.5
DKC1O60832 MBP-241ENST00000581878 563 ntTSL 48.36□□□□□ -1.071e-6■■■■■ 73.5
DKC1O60832 MBP-246ENST00000583798 573 ntTSL 43.77□□□□□ -1.811e-6■■■■■ 73.5
DKC1O60832 RPL5-202ENST00000370321 1043 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.211e-323■■■■■ 73.5
DKC1O60832 RPL5-205ENST00000497519 1210 ntTSL 210.72□□□□□ -0.691e-323■■■■■ 73.5
DKC1O60832 SNORA66-201ENST00000384792 133 ntBASIC5.71□□□□□ -1.51e-323■■■■■ 73.5
DKC1O60832 CEP72-202ENST00000499639 461 ntTSL 311.04□□□□□ -0.644e-10■■■■■ 73.2
DKC1O60832 ANKLE1-208ENST00000598347 2003 ntTSL 222.66■■□□□ 1.223e-16■■■■■ 73
DKC1O60832 ANKLE1-206ENST00000596626 2263 ntTSL 221.99■■□□□ 1.113e-16■■■■■ 73
DKC1O60832 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC21.88■■□□□ 1.093e-16■■■■■ 73
DKC1O60832 ANKLE1-202ENST00000404085 3081 ntTSL 216.04■□□□□ 0.163e-16■■■■■ 73
DKC1O60832 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.063e-16■■■■■ 73
DKC1O60832 CSNK2A2-203ENST00000563307 4978 ntTSL 314.07□□□□□ -0.163e-16■■■■■ 73
DKC1O60832 GOLGA3-207ENST00000545875 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.496e-9■■■■■ 73
DKC1O60832 SCN1A-222ENST00000642141 921 nt11.49□□□□□ -0.573e-16■■■■■ 73
DKC1O60832 SCN1A-207ENST00000507401 711 ntTSL 38.98□□□□□ -0.973e-16■■■■■ 73
DKC1O60832 CSNK2A2-206ENST00000567730 947 ntTSL 37.78□□□□□ -1.163e-16■■■■■ 73
DKC1O60832 SCN1A-213ENST00000636759 3606 ntTSL 57.32□□□□□ -1.243e-16■■■■■ 73
DKC1O60832 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.046e-7■■■■■ 72.9
DKC1O60832 DHRS3-201ENST00000430996 826 ntTSL 321.17■□□□□ 0.986e-7■■■■■ 72.9
DKC1O60832 DHRS3-203ENST00000482265 1036 ntTSL 317.12■□□□□ 0.336e-7■■■■■ 72.9
DKC1O60832 DHRS3-202ENST00000464917 539 ntTSL 314.65□□□□□ -0.066e-7■■■■■ 72.9
DKC1O60832 FOXN3-207ENST00000555010 340 ntTSL 53.03□□□□□ -1.925e-10■■■■■ 72.7
DKC1O60832 ASPSCR1-213ENST00000582355 1246 ntTSL 526.54■■□□□ 1.847e-28■■■■■ 72.5
DKC1O60832 ASPSCR1-219ENST00000584454 1919 ntTSL 1 (best)25.1■■□□□ 1.617e-28■■■■■ 72.5
DKC1O60832 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC24.76■■□□□ 1.557e-28■■■■■ 72.5
DKC1O60832 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC24.29■■□□□ 1.487e-28■■■■■ 72.5
DKC1O60832 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC24.22■■□□□ 1.477e-28■■■■■ 72.5
DKC1O60832 ASPSCR1-216ENST00000583503 641 ntTSL 319.97■□□□□ 0.797e-28■■■■■ 72.5
DKC1O60832 ASPSCR1-204ENST00000577733 5503 ntTSL 218.86■□□□□ 0.617e-28■■■■■ 72.5
DKC1O60832 FAM69A-204ENST00000615519 865 ntTSL 1 (best) BASIC13.63□□□□□ -0.239e-9■■■■■ 72.5
DKC1O60832 FAM69A-201ENST00000370310 2574 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.39e-9■■■■■ 72.5
DKC1O60832 FAM69A-205ENST00000616709 2426 ntTSL 3 BASIC12.42□□□□□ -0.429e-9■■■■■ 72.5
DKC1O60832 FAM69A-203ENST00000613902 2468 ntTSL 4 BASIC10.69□□□□□ -0.79e-9■■■■■ 72.5
DKC1O60832 LDLRAD4-201ENST00000359446 8486 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.142e-7■■■■■ 72.5
DKC1O60832 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC32.3■■■□□ 2.761e-10■■■■■ 72.3
DKC1O60832 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC28.08■■■□□ 2.091e-10■■■■■ 72.3
DKC1O60832 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC27.6■■■□□ 2.011e-10■■■■■ 72.3
DKC1O60832 PQLC1-206ENST00000474967 2319 ntTSL 521.19■□□□□ 0.981e-10■■■■■ 72.3
DKC1O60832 PQLC1-201ENST00000351365 2414 ntTSL 219.4■□□□□ 0.71e-10■■■■■ 72.3
DKC1O60832 PQLC1-212ENST00000590895 865 ntTSL 318.8■□□□□ 0.61e-10■■■■■ 72.3
DKC1O60832 PQLC1-204ENST00000466449 2887 ntTSL 217.9■□□□□ 0.461e-10■■■■■ 72.3
DKC1O60832 PQLC1-205ENST00000469369 593 ntTSL 415.14■□□□□ 0.011e-10■■■■■ 72.3
DKC1O60832 PQLC1-209ENST00000589000 558 ntTSL 412.87□□□□□ -0.351e-10■■■■■ 72.3
DKC1O60832 AC068675.1-201ENST00000588996 561 ntTSL 4 BASIC15.35■□□□□ 0.053e-7■■■■■ 72.3
DKC1O60832 TCEA3-203ENST00000450454 1559 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.333e-7■■■■■ 72.1
DKC1O60832 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC23.59■■□□□ 1.378e-7■■■■■ 72
DKC1O60832 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.142e-24■■■■■ 71.9
DKC1O60832 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC21.96■■□□□ 1.119e-13■■■■■ 71.9
DKC1O60832 MST1R-212ENST00000497001 1488 ntTSL 1 (best)19.69■□□□□ 0.749e-13■■■■■ 71.9
DKC1O60832 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC19.66■□□□□ 0.749e-13■■■■■ 71.9
DKC1O60832 MST1R-209ENST00000485044 1944 ntTSL 1 (best)18.45■□□□□ 0.549e-13■■■■■ 71.9
DKC1O60832 MST1R-211ENST00000493535 1626 ntTSL 1 (best)15.16■□□□□ 0.029e-13■■■■■ 71.9
DKC1O60832 MST1R-201ENST00000296474 4536 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.159e-13■■■■■ 71.9
DKC1O60832 MST1R-215ENST00000621387 4449 ntTSL 1 (best) BASIC13.87□□□□□ -0.199e-13■■■■■ 71.9
DKC1O60832 MST1R-213ENST00000612032 1065 ntTSL 1 (best) BASIC13.62□□□□□ -0.239e-13■■■■■ 71.9
DKC1O60832 MST1R-208ENST00000468525 2727 ntTSL 1 (best)13.51□□□□□ -0.259e-13■■■■■ 71.9
DKC1O60832 MST1R-203ENST00000411578 4683 ntTSL 513.25□□□□□ -0.299e-13■■■■■ 71.9
DKC1O60832 MST1R-202ENST00000344206 4198 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.519e-13■■■■■ 71.9
DKC1O60832 CMIP-202ENST00000537098 4357 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.062e-7■■■■■ 71.8
DKC1O60832 CMIP-203ENST00000539778 3937 ntTSL 1 (best) BASIC12.93□□□□□ -0.342e-7■■■■■ 71.8
DKC1O60832 SNORD1A-201ENST00000364968 72 ntBASIC1.66□□□□□ -2.145e-38■■■■■ 71.8
DKC1O60832 XXYLT1-210ENST00000491138 738 ntTSL 324.35■■□□□ 1.491e-8■■■■■ 71.7
DKC1O60832 XXYLT1-208ENST00000473200 698 ntTSL 222.98■■□□□ 1.271e-8■■■■■ 71.7
DKC1O60832 XXYLT1-203ENST00000418940 582 ntTSL 421.42■■□□□ 1.021e-8■■■■■ 71.7
DKC1O60832 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC19.13■□□□□ 0.651e-8■■■■■ 71.7
DKC1O60832 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.641e-8■■■■■ 71.7
DKC1O60832 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC18.12■□□□□ 0.491e-8■■■■■ 71.7
DKC1O60832 FARP1-219ENST00000596580 13532 ntTSL 5 BASIC9.08□□□□□ -0.962e-7■■■■■ 71.6
Retrieved 100 of 8,567 protein–RNA pairs in 290.4 ms