Protein–RNA interactions for Protein: P46970

NMD5, Nonsense-mediated mRNA decay protein 5, yeastyeast

Predictions only

Length 1,048 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
NMD5P46970 YKL100W-AYKL100W-A 90 nt1.35□□□□□ -2.19
NMD5P46970 MSH3YCR092C 3057 nt1.34□□□□□ -2.19
NMD5P46970 MSN5YDR335W 3675 nt1.34□□□□□ -2.19
NMD5P46970 WAR1YML076C 2835 nt1.34□□□□□ -2.19
NMD5P46970 YDR544CYDR544C 429 nt1.34□□□□□ -2.19
NMD5P46970 QCR9YGR183C 201 nt1.34□□□□□ -2.19
NMD5P46970 YNL067W-BYNL067W-B 141 nt1.34□□□□□ -2.19
NMD5P46970 EAF1YDR359C 2949 nt1.34□□□□□ -2.2
NMD5P46970 SOM1YEL059C-A 225 nt1.33□□□□□ -2.2
NMD5P46970 snR39BsnR39B 96 nt1.33□□□□□ -2.2
NMD5P46970 YML002WYML002W 2214 nt1.33□□□□□ -2.2
NMD5P46970 YNL284C-BYNL284C-B 5268 nt1.33□□□□□ -2.2
NMD5P46970 NOP9YJL010C 2001 nt1.33□□□□□ -2.2
NMD5P46970 SEC21YNL287W 2808 nt1.33□□□□□ -2.2
NMD5P46970 AZF1YOR113W 2745 nt1.32□□□□□ -2.2
NMD5P46970 TRM732YMR259C 4263 nt1.31□□□□□ -2.2
NMD5P46970 FYV10YIL097W 1551 nt1.3□□□□□ -2.2
NMD5P46970 YHR131W-AYHR131W-A 246 nt1.3□□□□□ -2.2
NMD5P46970 NUP188YML103C 4968 nt1.29□□□□□ -2.2
NMD5P46970 APL3YBL037W 3078 nt1.28□□□□□ -2.2
NMD5P46970 tH(GUG)E1tH(GUG)E1 72 nt1.28□□□□□ -2.2
NMD5P46970 tH(GUG)E2tH(GUG)E2 72 nt1.28□□□□□ -2.2
NMD5P46970 tH(GUG)G1tH(GUG)G1 72 nt1.28□□□□□ -2.2
NMD5P46970 tH(GUG)G2tH(GUG)G2 72 nt1.28□□□□□ -2.2
NMD5P46970 tH(GUG)HtH(GUG)H 72 nt1.28□□□□□ -2.2
NMD5P46970 tH(GUG)KtH(GUG)K 72 nt1.28□□□□□ -2.2
NMD5P46970 tH(GUG)MtH(GUG)M 72 nt1.28□□□□□ -2.2
NMD5P46970 snR190snR190 190 nt1.28□□□□□ -2.2
NMD5P46970 YLR041WYLR041W 321 nt1.27□□□□□ -2.21
NMD5P46970 YMR326CYMR326C 309 nt1.27□□□□□ -2.21
NMD5P46970 SWI4YER111C 3282 nt1.27□□□□□ -2.21
NMD5P46970 tM(CAU)Q2tM(CAU)Q2 78 nt1.26□□□□□ -2.21
NMD5P46970 RPL26BYGR034W 384 nt1.26□□□□□ -2.21
NMD5P46970 LAA1YJL207C 6045 nt1.26□□□□□ -2.21
NMD5P46970 ASE1YOR058C 2658 nt1.25□□□□□ -2.21
NMD5P46970 BEM2YER155C 6504 nt1.25□□□□□ -2.21
NMD5P46970 snR61snR61 90 nt1.25□□□□□ -2.21
NMD5P46970 CLU1YMR012W 3834 nt1.24□□□□□ -2.21
NMD5P46970 YLR232WYLR232W 348 nt1.24□□□□□ -2.21
NMD5P46970 YBR200W-AYBR200W-A 165 nt1.24□□□□□ -2.21
NMD5P46970 YHR217CYHR217C 462 nt1.22□□□□□ -2.21
NMD5P46970 CDC39YCR093W 6327 nt1.21□□□□□ -2.22
NMD5P46970 YGR130CYGR130C 2451 nt1.21□□□□□ -2.22
NMD5P46970 SEC3YER008C 4011 nt1.21□□□□□ -2.22
NMD5P46970 RAD9YDR217C 3930 nt1.2□□□□□ -2.22
NMD5P46970 NUP145YGL092W 3954 nt1.2□□□□□ -2.22
NMD5P46970 YDR210WYDR210W 228 nt1.19□□□□□ -2.22
NMD5P46970 STF2YGR008C 255 nt1.19□□□□□ -2.22
NMD5P46970 HUG1YML058W-A 207 nt1.19□□□□□ -2.22
NMD5P46970 YGL041C-BYGL041C-B 183 nt1.18□□□□□ -2.22
NMD5P46970 YJR029WYJR029W 5268 nt1.17□□□□□ -2.22
NMD5P46970 YPR137C-BYPR137C-B 5268 nt1.17□□□□□ -2.22
NMD5P46970 RCO1YMR075W 2055 nt1.17□□□□□ -2.22
NMD5P46970 YJL127W-AYJL127W-A 117 nt1.17□□□□□ -2.22
NMD5P46970 COG6YNL041C 2520 nt1.15□□□□□ -2.23
NMD5P46970 IML1YJR138W 4755 nt1.15□□□□□ -2.23
NMD5P46970 PRP16YKR086W 3216 nt1.15□□□□□ -2.23
NMD5P46970 KAP120YPL125W 3099 nt1.14□□□□□ -2.23
NMD5P46970 tN(GUU)QtN(GUU)Q 71 nt1.14□□□□□ -2.23
NMD5P46970 tV(UAC)BtV(UAC)B 74 nt1.14□□□□□ -2.23
NMD5P46970 tV(UAC)DtV(UAC)D 74 nt1.14□□□□□ -2.23
NMD5P46970 BUD3YCL014W 4911 nt1.13□□□□□ -2.23
NMD5P46970 SEC1YDR164C 2175 nt1.13□□□□□ -2.23
NMD5P46970 NST1YNL091W 3723 nt1.13□□□□□ -2.23
NMD5P46970 SEC8YPR055W 3198 nt1.12□□□□□ -2.23
NMD5P46970 BEM3YPL115C 3387 nt1.11□□□□□ -2.23
NMD5P46970 VAM6YDL077C 3150 nt1.11□□□□□ -2.23
NMD5P46970 SIP4YJL089W 2490 nt1.1□□□□□ -2.23
NMD5P46970 YDL073WYDL073W 2955 nt1.1□□□□□ -2.23
NMD5P46970 SBH1YER087C-B 249 nt1.1□□□□□ -2.23
NMD5P46970 YPR160W-AYPR160W-A 81 nt1.1□□□□□ -2.23
NMD5P46970 SPT7YBR081C 3999 nt1.09□□□□□ -2.23
NMD5P46970 YDL247W-AYDL247W-A 75 nt1.09□□□□□ -2.23
NMD5P46970 SCC2YDR180W 4482 nt1.09□□□□□ -2.24
NMD5P46970 BIR1YJR089W 2865 nt1.08□□□□□ -2.24
NMD5P46970 YGR146C-AYGR146C-A 162 nt1.08□□□□□ -2.24
NMD5P46970 YLR399W-AYLR399W-A 105 nt1.08□□□□□ -2.24
NMD5P46970 YNL266WYNL266W 420 nt1.08□□□□□ -2.24
NMD5P46970 ROM2YLR371W 4071 nt1.08□□□□□ -2.24
NMD5P46970 UBP3YER151C 2739 nt1.06□□□□□ -2.24
NMD5P46970 DOP1YDR141C 5097 nt1.03□□□□□ -2.24
NMD5P46970 snR81snR81 201 nt1.03□□□□□ -2.24
NMD5P46970 YBR072C-AYBR072C-A 162 nt1.03□□□□□ -2.24
NMD5P46970 MYO1YHR023W 5787 nt1.02□□□□□ -2.25
NMD5P46970 YSP1YHR155W 3687 nt1□□□□□ -2.25
NMD5P46970 tS(GCU)Q1tS(GCU)Q1 86 nt1□□□□□ -2.25
NMD5P46970 NNF2YGR089W 2811 nt0.99□□□□□ -2.25
NMD5P46970 EMT1tM(CAU)D 73 nt0.99□□□□□ -2.25
NMD5P46970 EMT5tM(CAU)J1 73 nt0.99□□□□□ -2.25
NMD5P46970 EMT3tM(CAU)J2 73 nt0.99□□□□□ -2.25
NMD5P46970 EMT4tM(CAU)M 73 nt0.99□□□□□ -2.25
NMD5P46970 EMT2tM(CAU)O2 73 nt0.99□□□□□ -2.25
NMD5P46970 RKR1YMR247C 4689 nt0.97□□□□□ -2.25
NMD5P46970 GLG1YKR058W 1851 nt0.97□□□□□ -2.25
NMD5P46970 YAL037C-AYAL037C-A 93 nt0.96□□□□□ -2.26
NMD5P46970 YOL083C-AYOL083C-A 141 nt0.96□□□□□ -2.26
NMD5P46970 PAU24YBR301W 363 nt0.96□□□□□ -2.26
NMD5P46970 YPR117WYPR117W 7470 nt0.96□□□□□ -2.26
NMD5P46970 YIL142C-AYIL142C-A 333 nt0.95□□□□□ -2.26
NMD5P46970 YBR196C-AYBR196C-A 150 nt0.95□□□□□ -2.26
Retrieved 100 of 7,029 protein–RNA pairs in 30.4 ms