Protein–RNA interactions for Protein: Q01477

UBP3, Ubiquitin carboxyl-terminal hydrolase 3, yeastyeast

Known RBP RIP-Chip data

Length 912 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UBP3Q01477 TTI1YKL033W 3117 nt2.22□□□□□ -2.05
UBP3Q01477 BRE1YDL074C 2103 nt2.21□□□□□ -2.06
UBP3Q01477 SBE22YHR103W 2559 nt2.21□□□□□ -2.06
UBP3Q01477 KOG1YHR186C 4674 nt2.21□□□□□ -2.06
UBP3Q01477 USO1YDL058W 5373 nt2.21□□□□□ -2.06
UBP3Q01477 SFB2YNL049C 2631 nt2.21□□□□□ -2.06
UBP3Q01477 TRM3YDL112W 4311 nt2.2□□□□□ -2.06
UBP3Q01477 ADR1YDR216W 3972 nt2.2□□□□□ -2.06
UBP3Q01477 UTP21YLR409C 2820 nt2.2□□□□□ -2.06
UBP3Q01477 POL5YEL055C 3069 nt2.2□□□□□ -2.06 RIP-Chip
UBP3Q01477 NEO1YIL048W 3456 nt2.19□□□□□ -2.06
UBP3Q01477 SPP41YDR464W 4308 nt2.18□□□□□ -2.06 RIP-Chip
UBP3Q01477 YMR175W-AYMR175W-A 195 nt2.18□□□□□ -2.06
UBP3Q01477 CMC4YMR194C-B 222 nt2.17□□□□□ -2.06
UBP3Q01477 COG4YPR105C 2586 nt2.17□□□□□ -2.06
UBP3Q01477 YNL144CYNL144C 2223 nt2.17□□□□□ -2.06 RIP-Chip
UBP3Q01477 TOR2YKL203C 7425 nt2.17□□□□□ -2.06
UBP3Q01477 PRP5YBR237W 2550 nt2.16□□□□□ -2.06 RIP-Chip
UBP3Q01477 YCS4YLR272C 3531 nt2.16□□□□□ -2.06
UBP3Q01477 YOR019WYOR019W 2193 nt2.16□□□□□ -2.06
UBP3Q01477 LHS1YKL073W 2646 nt2.15□□□□□ -2.06 RIP-Chip
UBP3Q01477 SKI3YPR189W 4299 nt2.15□□□□□ -2.07
UBP3Q01477 KCS1YDR017C 3153 nt2.15□□□□□ -2.07
UBP3Q01477 APL1YJR005W 2103 nt2.15□□□□□ -2.07
UBP3Q01477 PKH2YOL100W 3246 nt2.14□□□□□ -2.07
UBP3Q01477 GYP5YPL249C 2685 nt2.14□□□□□ -2.07
UBP3Q01477 SLI15YBR156C 2097 nt2.14□□□□□ -2.07
UBP3Q01477 MDS3YGL197W 4464 nt2.14□□□□□ -2.07
UBP3Q01477 YLL054CYLL054C 2532 nt2.14□□□□□ -2.07
UBP3Q01477 EMC5YIL027C 426 nt2.13□□□□□ -2.07
UBP3Q01477 STB6YKL072W 2301 nt2.13□□□□□ -2.07
UBP3Q01477 CHS6YJL099W 2241 nt2.12□□□□□ -2.07
UBP3Q01477 STF2YGR008C 255 nt2.12□□□□□ -2.07
UBP3Q01477 FKS1YLR342W 5631 nt2.12□□□□□ -2.07 RIP-Chip
UBP3Q01477 SOM1YEL059C-A 225 nt2.11□□□□□ -2.07
UBP3Q01477 YAL067W-AYAL067W-A 228 nt2.11□□□□□ -2.07
UBP3Q01477 YDL206WYDL206W 2289 nt2.1□□□□□ -2.07
UBP3Q01477 NUT1YGL151W 3399 nt2.1□□□□□ -2.07
UBP3Q01477 YGL182CYGL182C 324 nt2.1□□□□□ -2.07
UBP3Q01477 FAB1YFR019W 6837 nt2.1□□□□□ -2.07
UBP3Q01477 EAF1YDR359C 2949 nt2.1□□□□□ -2.07
UBP3Q01477 YER172C-AYER172C-A 381 nt2.09□□□□□ -2.07
UBP3Q01477 UBR2YLR024C 5619 nt2.09□□□□□ -2.07
UBP3Q01477 UFD2YDL190C 2886 nt2.08□□□□□ -2.08 RIP-Chip
UBP3Q01477 GCN2YDR283C 4980 nt2.07□□□□□ -2.08
UBP3Q01477 YHR214C-BYHR214C-B 5382 nt2.07□□□□□ -2.08
UBP3Q01477 YGL041C-BYGL041C-B 183 nt2.07□□□□□ -2.08
UBP3Q01477 PKH3YDR466W 2697 nt2.07□□□□□ -2.08 RIP-Chip
UBP3Q01477 ALY2YJL084C 3141 nt2.07□□□□□ -2.08
UBP3Q01477 BFR2YDR299W 1605 nt2.06□□□□□ -2.08 RIP-Chip
UBP3Q01477 YLL020CYLL020C 306 nt2.06□□□□□ -2.08
UBP3Q01477 SPO24YPR036W-A 204 nt2.05□□□□□ -2.08
UBP3Q01477 YBL039C-AYBL039C-A 84 nt2.04□□□□□ -2.08
UBP3Q01477 YMR045CYMR045C 5268 nt2.03□□□□□ -2.08
UBP3Q01477 PAN2YGL094C 3348 nt2.02□□□□□ -2.09
UBP3Q01477 RCO1YMR075W 2055 nt2.02□□□□□ -2.09 RIP-Chip
UBP3Q01477 YGL123C-AYGL123C-A 231 nt2.02□□□□□ -2.09
UBP3Q01477 snR39BsnR39B 96 nt2.01□□□□□ -2.09
UBP3Q01477 COG6YNL041C 2520 nt2.01□□□□□ -2.09
UBP3Q01477 YLR419WYLR419W 4308 nt2□□□□□ -2.09
UBP3Q01477 YHR131W-AYHR131W-A 246 nt1.99□□□□□ -2.09
UBP3Q01477 YMR272W-BYMR272W-B 108 nt1.99□□□□□ -2.09
UBP3Q01477 KIP1YBL063W 3336 nt1.99□□□□□ -2.09
UBP3Q01477 KAP122YGL016W 3246 nt1.98□□□□□ -2.09 RIP-Chip
UBP3Q01477 QCR9YGR183C 201 nt1.98□□□□□ -2.09
UBP3Q01477 YIL142C-AYIL142C-A 333 nt1.98□□□□□ -2.09
UBP3Q01477 RAD50YNL250W 3939 nt1.98□□□□□ -2.09
UBP3Q01477 tS(GCU)Q1tS(GCU)Q1 86 nt1.97□□□□□ -2.09
UBP3Q01477 COX5BYIL111W 456 nt1.97□□□□□ -2.09
UBP3Q01477 YOR161W-AYOR161W-A 81 nt1.96□□□□□ -2.1
UBP3Q01477 RTP1YMR185W 2946 nt1.95□□□□□ -2.1 RIP-Chip
UBP3Q01477 YKL100W-AYKL100W-A 90 nt1.95□□□□□ -2.1
UBP3Q01477 MYO2YOR326W 4725 nt1.95□□□□□ -2.1
UBP3Q01477 COA6YMR244C-A 315 nt1.94□□□□□ -2.1 RIP-Chip
UBP3Q01477 UTP8YGR128C 2142 nt1.94□□□□□ -2.1 RIP-Chip
UBP3Q01477 BST1YFL025C 3090 nt1.94□□□□□ -2.1
UBP3Q01477 PEP1YBL017C 4740 nt1.93□□□□□ -2.1
UBP3Q01477 CLU1YMR012W 3834 nt1.93□□□□□ -2.1
UBP3Q01477 YLR422WYLR422W 5799 nt1.93□□□□□ -2.1
UBP3Q01477 RSM22YKL155C 1887 nt1.93□□□□□ -2.1
UBP3Q01477 RAD9YDR217C 3930 nt1.93□□□□□ -2.1
UBP3Q01477 SLX4YLR135W 2247 nt1.93□□□□□ -2.1
UBP3Q01477 TAH1YCR060W 336 nt1.92□□□□□ -2.1
UBP3Q01477 tT(UGU)HtT(UGU)H 72 nt1.92□□□□□ -2.1
UBP3Q01477 IRC20YLR247C 4671 nt1.92□□□□□ -2.1 RIP-Chip
UBP3Q01477 RPM2YML091C 3609 nt1.92□□□□□ -2.1 RIP-Chip
UBP3Q01477 YLR041WYLR041W 321 nt1.91□□□□□ -2.1
UBP3Q01477 YOR093CYOR093C 4947 nt1.9□□□□□ -2.11
UBP3Q01477 MON2YNL297C 4911 nt1.89□□□□□ -2.11 RIP-Chip
UBP3Q01477 SMC4YLR086W 4257 nt1.89□□□□□ -2.11
UBP3Q01477 YAR009CYAR009C 3591 nt1.89□□□□□ -2.11
UBP3Q01477 MMS4YBR098W 2076 nt1.89□□□□□ -2.11
UBP3Q01477 NUP157YER105C 4176 nt1.88□□□□□ -2.11
UBP3Q01477 DNF3YMR162C 4971 nt1.87□□□□□ -2.11 RIP-Chip
UBP3Q01477 YMR247W-AYMR247W-A 144 nt1.86□□□□□ -2.11
UBP3Q01477 ROM2YLR371W 4071 nt1.86□□□□□ -2.11
UBP3Q01477 snR81snR81 201 nt1.85□□□□□ -2.11
UBP3Q01477 YLL066W-BYLL066W-B 171 nt1.85□□□□□ -2.11
UBP3Q01477 YML002WYML002W 2214 nt1.85□□□□□ -2.11
UBP3Q01477 KAP120YPL125W 3099 nt1.84□□□□□ -2.11
Retrieved 100 of 7,029 protein–RNA pairs in 65.1 ms