Protein–RNA interactions for Protein: P40965

MSH4, MutS protein homolog 4, yeastyeast

Predicted RBP Predictions only

Length 878 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
MSH4P40965 MSH6YDR097C 3729 nt2.31□□□□□ -2.04
MSH4P40965 YGL041C-BYGL041C-B 183 nt2.31□□□□□ -2.04
MSH4P40965 CHS6YJL099W 2241 nt2.3□□□□□ -2.04
MSH4P40965 SEY1YOR165W 2331 nt2.3□□□□□ -2.04
MSH4P40965 SAC3YDR159W 3906 nt2.3□□□□□ -2.04
MSH4P40965 SEC63YOR254C 1992 nt2.3□□□□□ -2.04
MSH4P40965 PKH2YOL100W 3246 nt2.3□□□□□ -2.04
MSH4P40965 NEO1YIL048W 3456 nt2.3□□□□□ -2.04
MSH4P40965 AGC1YPR021C 2709 nt2.29□□□□□ -2.04
MSH4P40965 SEC31YDL195W 3822 nt2.28□□□□□ -2.04
MSH4P40965 YLL054CYLL054C 2532 nt2.28□□□□□ -2.04
MSH4P40965 APL1YJR005W 2103 nt2.28□□□□□ -2.04
MSH4P40965 YGR109W-BYGR109W-B 4644 nt2.28□□□□□ -2.04
MSH4P40965 HIR3YJR140C 4947 nt2.27□□□□□ -2.05
MSH4P40965 ANS1YHR126C 480 nt2.27□□□□□ -2.05
MSH4P40965 FKS1YLR342W 5631 nt2.27□□□□□ -2.05
MSH4P40965 STF2YGR008C 255 nt2.26□□□□□ -2.05
MSH4P40965 COG4YPR105C 2586 nt2.26□□□□□ -2.05
MSH4P40965 IRE1YHR079C 3348 nt2.25□□□□□ -2.05
MSH4P40965 TBS1YBR150C 3285 nt2.25□□□□□ -2.05
MSH4P40965 YIL142C-AYIL142C-A 333 nt2.25□□□□□ -2.05
MSH4P40965 YMR175W-AYMR175W-A 195 nt2.25□□□□□ -2.05
MSH4P40965 SLI15YBR156C 2097 nt2.25□□□□□ -2.05
MSH4P40965 YOR343W-BYOR343W-B 5313 nt2.24□□□□□ -2.05
MSH4P40965 YNL144CYNL144C 2223 nt2.24□□□□□ -2.05
MSH4P40965 YGL182CYGL182C 324 nt2.23□□□□□ -2.05
MSH4P40965 LHS1YKL073W 2646 nt2.22□□□□□ -2.05
MSH4P40965 TOR2YKL203C 7425 nt2.22□□□□□ -2.05
MSH4P40965 YJR039WYJR039W 3366 nt2.2□□□□□ -2.06
MSH4P40965 IRC20YLR247C 4671 nt2.2□□□□□ -2.06
MSH4P40965 TMA7YLR262C-A 195 nt2.2□□□□□ -2.06
MSH4P40965 ADR1YDR216W 3972 nt2.19□□□□□ -2.06
MSH4P40965 YDL206WYDL206W 2289 nt2.19□□□□□ -2.06
MSH4P40965 SFB2YNL049C 2631 nt2.19□□□□□ -2.06
MSH4P40965 UTP8YGR128C 2142 nt2.18□□□□□ -2.06
MSH4P40965 FRK1YPL141C 2598 nt2.17□□□□□ -2.06
MSH4P40965 MDS3YGL197W 4464 nt2.17□□□□□ -2.06
MSH4P40965 QCR9YGR183C 201 nt2.17□□□□□ -2.06
MSH4P40965 YLL020CYLL020C 306 nt2.17□□□□□ -2.06
MSH4P40965 YAL067W-AYAL067W-A 228 nt2.17□□□□□ -2.06
MSH4P40965 MYO4YAL029C 4416 nt2.17□□□□□ -2.06
MSH4P40965 STB6YKL072W 2301 nt2.17□□□□□ -2.06
MSH4P40965 NUP192YJL039C 5052 nt2.14□□□□□ -2.07
MSH4P40965 BFR2YDR299W 1605 nt2.14□□□□□ -2.07
MSH4P40965 YGL123C-AYGL123C-A 231 nt2.14□□□□□ -2.07
MSH4P40965 UFD2YDL190C 2886 nt2.14□□□□□ -2.07
MSH4P40965 KCS1YDR017C 3153 nt2.14□□□□□ -2.07
MSH4P40965 tS(GCU)Q1tS(GCU)Q1 86 nt2.13□□□□□ -2.07
MSH4P40965 YHR131W-AYHR131W-A 246 nt2.13□□□□□ -2.07
MSH4P40965 YBL039C-AYBL039C-A 84 nt2.13□□□□□ -2.07
MSH4P40965 YMR272W-BYMR272W-B 108 nt2.13□□□□□ -2.07
MSH4P40965 UTP21YLR409C 2820 nt2.12□□□□□ -2.07
MSH4P40965 SKI3YPR189W 4299 nt2.11□□□□□ -2.07
MSH4P40965 TRM3YDL112W 4311 nt2.11□□□□□ -2.07
MSH4P40965 tT(UGU)HtT(UGU)H 72 nt2.11□□□□□ -2.07
MSH4P40965 snR39BsnR39B 96 nt2.11□□□□□ -2.07
MSH4P40965 YMR045CYMR045C 5268 nt2.11□□□□□ -2.07
MSH4P40965 UBR2YLR024C 5619 nt2.1□□□□□ -2.07
MSH4P40965 YHR214C-BYHR214C-B 5382 nt2.1□□□□□ -2.07
MSH4P40965 YLL066W-BYLL066W-B 171 nt2.1□□□□□ -2.07
MSH4P40965 YCS4YLR272C 3531 nt2.1□□□□□ -2.07
MSH4P40965 YKL100W-AYKL100W-A 90 nt2.09□□□□□ -2.07
MSH4P40965 RCO1YMR075W 2055 nt2.09□□□□□ -2.07
MSH4P40965 POL5YEL055C 3069 nt2.09□□□□□ -2.08
MSH4P40965 SPO24YPR036W-A 204 nt2.08□□□□□ -2.08
MSH4P40965 RSM22YKL155C 1887 nt2.07□□□□□ -2.08
MSH4P40965 TAH1YCR060W 336 nt2.07□□□□□ -2.08
MSH4P40965 EMC5YIL027C 426 nt2.07□□□□□ -2.08
MSH4P40965 YMR247W-AYMR247W-A 144 nt2.07□□□□□ -2.08
MSH4P40965 YOR161W-AYOR161W-A 81 nt2.07□□□□□ -2.08
MSH4P40965 snR45snR45 172 nt2.06□□□□□ -2.08
MSH4P40965 EAF1YDR359C 2949 nt2.05□□□□□ -2.08
MSH4P40965 COX5BYIL111W 456 nt2.05□□□□□ -2.08
MSH4P40965 COA6YMR244C-A 315 nt2.05□□□□□ -2.08
MSH4P40965 BRR2YER172C 6492 nt2.05□□□□□ -2.08
MSH4P40965 HSL1YKL101W 4557 nt2.05□□□□□ -2.08
MSH4P40965 NUT1YGL151W 3399 nt2.05□□□□□ -2.08
MSH4P40965 PKH3YDR466W 2697 nt2.04□□□□□ -2.08
MSH4P40965 CFT1YDR301W 4074 nt2.04□□□□□ -2.08
MSH4P40965 tM(CAU)Q2tM(CAU)Q2 78 nt2.02□□□□□ -2.09
MSH4P40965 snR81snR81 201 nt2.01□□□□□ -2.09
MSH4P40965 PAN2YGL094C 3348 nt2□□□□□ -2.09
MSH4P40965 MYO2YOR326W 4725 nt2□□□□□ -2.09
MSH4P40965 RTP1YMR185W 2946 nt2□□□□□ -2.09
MSH4P40965 ALY2YJL084C 3141 nt2□□□□□ -2.09
MSH4P40965 MEC1YBR136W 7107 nt1.98□□□□□ -2.09
MSH4P40965 RAD50YNL250W 3939 nt1.98□□□□□ -2.09
MSH4P40965 MMS4YBR098W 2076 nt1.98□□□□□ -2.09
MSH4P40965 YML002WYML002W 2214 nt1.98□□□□□ -2.09
MSH4P40965 KAP122YGL016W 3246 nt1.97□□□□□ -2.09
MSH4P40965 SMC1YFL008W 3678 nt1.96□□□□□ -2.1
MSH4P40965 NUP157YER105C 4176 nt1.95□□□□□ -2.1
MSH4P40965 YAR009CYAR009C 3591 nt1.95□□□□□ -2.1
MSH4P40965 DNF3YMR162C 4971 nt1.95□□□□□ -2.1
MSH4P40965 COG6YNL041C 2520 nt1.94□□□□□ -2.1
MSH4P40965 YAL037C-AYAL037C-A 93 nt1.94□□□□□ -2.1
MSH4P40965 CAT8YMR280C 4302 nt1.94□□□□□ -2.1
MSH4P40965 MSH3YCR092C 3057 nt1.94□□□□□ -2.1
MSH4P40965 SEC21YNL287W 2808 nt1.94□□□□□ -2.1
MSH4P40965 MON2YNL297C 4911 nt1.93□□□□□ -2.1
Retrieved 100 of 7,029 protein–RNA pairs in 64.8 ms