Protein–RNA interactions for Protein: P38854

TDA11, Topoisomerase I damage affected protein 11, yeastyeast

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
TDA11P38854 YLR264C-AYLR264C-A 117 nt0.52□□□□□ -2.33
TDA11P38854 BEM3YPL115C 3387 nt0.52□□□□□ -2.33
TDA11P38854 TAR1YLR154W-C 375 nt0.51□□□□□ -2.33
TDA11P38854 YNL211CYNL211C 261 nt0.51□□□□□ -2.33
TDA11P38854 UTP10YJL109C 5310 nt0.51□□□□□ -2.33
TDA11P38854 FMP27YLR454W 7887 nt0.5□□□□□ -2.33
TDA11P38854 YER137W-AYER137W-A 306 nt0.5□□□□□ -2.33
TDA11P38854 YPL225WYPL225W 441 nt0.5□□□□□ -2.33
TDA11P38854 ESP1YGR098C 4893 nt0.49□□□□□ -2.33
TDA11P38854 PRP5YBR237W 2550 nt0.49□□□□□ -2.33
TDA11P38854 RPS25BYLR333C 327 nt0.49□□□□□ -2.33
TDA11P38854 YOR121CYOR121C 306 nt0.49□□□□□ -2.33
TDA11P38854 LEE1YPL054W 906 nt0.49□□□□□ -2.33
TDA11P38854 SEC8YPR055W 3198 nt0.49□□□□□ -2.33
TDA11P38854 HMRA2YCR096C 360 nt0.48□□□□□ -2.33
TDA11P38854 YPR160W-AYPR160W-A 81 nt0.48□□□□□ -2.33
TDA11P38854 PAA1YDR071C 576 nt0.47□□□□□ -2.33
TDA11P38854 YOR011W-AYOR011W-A 207 nt0.47□□□□□ -2.33
TDA11P38854 SPO21YOL091W 1830 nt0.47□□□□□ -2.33
TDA11P38854 YHL046W-AYHL046W-A 327 nt0.46□□□□□ -2.34
TDA11P38854 IQG1YPL242C 4488 nt0.46□□□□□ -2.34
TDA11P38854 RPL26BYGR034W 384 nt0.45□□□□□ -2.34
TDA11P38854 YIL134C-AYIL134C-A 204 nt0.45□□□□□ -2.34
TDA11P38854 YDL185C-AYDL185C-A 228 nt0.44□□□□□ -2.34
TDA11P38854 YMR001C-AYMR001C-A 231 nt0.44□□□□□ -2.34
TDA11P38854 ABF2YMR072W 552 nt0.44□□□□□ -2.34
TDA11P38854 BIR1YJR089W 2865 nt0.44□□□□□ -2.34
TDA11P38854 UTP8YGR128C 2142 nt0.44□□□□□ -2.34
TDA11P38854 RPL35AYDL191W 363 nt0.43□□□□□ -2.34
TDA11P38854 YJL127W-AYJL127W-A 117 nt0.43□□□□□ -2.34
TDA11P38854 YAR029WYAR029W 225 nt0.43□□□□□ -2.34
TDA11P38854 AI1Q0050 2505 nt0.42□□□□□ -2.34
TDA11P38854 YAL068W-AYAL068W-A 255 nt0.42□□□□□ -2.34
TDA11P38854 OST4YDL232W 111 nt0.41□□□□□ -2.34
TDA11P38854 tW(UCA)QtW(UCA)Q 74 nt0.41□□□□□ -2.34
TDA11P38854 YAL067W-AYAL067W-A 228 nt0.41□□□□□ -2.34
TDA11P38854 YLR222C-AYLR222C-A 231 nt0.41□□□□□ -2.34
TDA11P38854 SGF11YPL047W 300 nt0.41□□□□□ -2.34
TDA11P38854 Q0144Q0144 330 nt0.4□□□□□ -2.35
TDA11P38854 YLR399W-AYLR399W-A 105 nt0.4□□□□□ -2.35
TDA11P38854 STE5YDR103W 2754 nt0.4□□□□□ -2.35
TDA11P38854 YAR053WYAR053W 297 nt0.39□□□□□ -2.35
TDA11P38854 HTB2YBL002W 396 nt0.39□□□□□ -2.35
TDA11P38854 YOR293C-AYOR293C-A 150 nt0.39□□□□□ -2.35
TDA11P38854 YHR007C-AYHR007C-A 216 nt0.38□□□□□ -2.35
TDA11P38854 YOR345CYOR345C 351 nt0.38□□□□□ -2.35
TDA11P38854 ULP2YIL031W 3105 nt0.38□□□□□ -2.35
TDA11P38854 SSS1YDR086C 243 nt0.37□□□□□ -2.35
TDA11P38854 YLR154W-FYLR154W-F 141 nt0.37□□□□□ -2.35
TDA11P38854 PRP42YDR235W 1635 nt0.36□□□□□ -2.35
TDA11P38854 YER078W-AYER078W-A 165 nt0.36□□□□□ -2.35
TDA11P38854 SBH1YER087C-B 249 nt0.36□□□□□ -2.35
TDA11P38854 TAH1YCR060W 336 nt0.35□□□□□ -2.35
TDA11P38854 COX5BYIL111W 456 nt0.35□□□□□ -2.35
TDA11P38854 YIL115W-AYIL115W-A 372 nt0.35□□□□□ -2.35
TDA11P38854 COG8YML071C 1824 nt0.34□□□□□ -2.35
TDA11P38854 YJL026C-AYJL026C-A 222 nt0.34□□□□□ -2.36
TDA11P38854 snR190snR190 190 nt0.34□□□□□ -2.36
TDA11P38854 PET111YMR257C 2403 nt0.33□□□□□ -2.36
TDA11P38854 VIK1YPL253C 1944 nt0.32□□□□□ -2.36
TDA11P38854 YGR035CYGR035C 351 nt0.32□□□□□ -2.36
TDA11P38854 YDR354C-AYDR354C-A 144 nt0.31□□□□□ -2.36
TDA11P38854 tN(GUU)QtN(GUU)Q 71 nt0.31□□□□□ -2.36
TDA11P38854 YMR307C-AYMR307C-A 195 nt0.31□□□□□ -2.36
TDA11P38854 YOR192C-BYOR192C-B 5313 nt0.3□□□□□ -2.36
TDA11P38854 MLP1YKR095W 5628 nt0.29□□□□□ -2.36
TDA11P38854 BUL2YML111W 2763 nt0.29□□□□□ -2.36
TDA11P38854 PRP39YML046W 1890 nt0.29□□□□□ -2.36
TDA11P38854 MLP2YIL149C 5040 nt0.28□□□□□ -2.36
TDA11P38854 YCR022CYCR022C 345 nt0.28□□□□□ -2.36
TDA11P38854 THO2YNL139C 4794 nt0.28□□□□□ -2.37
TDA11P38854 BIL1YOR304C-A 231 nt0.27□□□□□ -2.37
TDA11P38854 YCR018C-AYCR018C-A 255 nt0.26□□□□□ -2.37
TDA11P38854 YDR048CYDR048C 315 nt0.26□□□□□ -2.37
TDA11P38854 RCO1YMR075W 2055 nt0.25□□□□□ -2.37
TDA11P38854 ULI1YFR026C 510 nt0.25□□□□□ -2.37
TDA11P38854 VAR1Q0140 1197 nt0.25□□□□□ -2.37
TDA11P38854 YAL063C-AYAL063C-A 291 nt0.25□□□□□ -2.37
TDA11P38854 RPS27BYHR021C 249 nt0.24□□□□□ -2.37
TDA11P38854 YBL100W-BYBL100W-B 5313 nt0.23□□□□□ -2.37
TDA11P38854 ORC3YLL004W 1851 nt0.23□□□□□ -2.37
TDA11P38854 YDR118W-AYDR118W-A 117 nt0.23□□□□□ -2.37
TDA11P38854 YDR371C-AYDR371C-A 105 nt0.23□□□□□ -2.37
TDA11P38854 RPS26AYGL189C 360 nt0.23□□□□□ -2.37
TDA11P38854 YLR282CYLR282C 342 nt0.22□□□□□ -2.37
TDA11P38854 YNL054W-BYNL054W-B 5250 nt0.21□□□□□ -2.38
TDA11P38854 YDR157WYDR157W 402 nt0.21□□□□□ -2.38
TDA11P38854 YLR041WYLR041W 321 nt0.21□□□□□ -2.38
TDA11P38854 YOL013W-AYOL013W-A 192 nt0.21□□□□□ -2.38
TDA11P38854 YNL146WYNL146W 303 nt0.2□□□□□ -2.38
TDA11P38854 YPR016W-AYPR016W-A 261 nt0.2□□□□□ -2.38
TDA11P38854 YPR092WYPR092W 306 nt0.2□□□□□ -2.38
TDA11P38854 NIP1YMR309C 2439 nt0.2□□□□□ -2.38
TDA11P38854 NNF2YGR089W 2811 nt0.2□□□□□ -2.38
TDA11P38854 COY1YKL179C 2040 nt0.18□□□□□ -2.38
TDA11P38854 HTL1YCR020W-B 237 nt0.18□□□□□ -2.38
TDA11P38854 YEL020C-BYEL020C-B 198 nt0.18□□□□□ -2.38
TDA11P38854 YKL136WYKL136W 399 nt0.18□□□□□ -2.38
TDA11P38854 YOR161W-AYOR161W-A 81 nt0.17□□□□□ -2.38
TDA11P38854 YDR102CYDR102C 333 nt0.16□□□□□ -2.38
Retrieved 100 of 7,029 protein–RNA pairs in 26.6 ms