Protein–RNA interactions for Protein: P0CX71

TY1A-ER1, Transposon Ty1-ER1 Gag polyprotein, yeastyeast

Predictions only

Length 440 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
TY1A-ER1P0CX71 tL(CAA)G3tL(CAA)G3 82 nt2.03□□□□□ -2.08
TY1A-ER1P0CX71 tL(CAA)KtL(CAA)K 82 nt2.03□□□□□ -2.08
TY1A-ER1P0CX71 tL(CAA)LtL(CAA)L 82 nt2.03□□□□□ -2.08
TY1A-ER1P0CX71 tL(CAA)MtL(CAA)M 82 nt2.03□□□□□ -2.08
TY1A-ER1P0CX71 tL(CAA)NtL(CAA)N 82 nt2.03□□□□□ -2.08
TY1A-ER1P0CX71 INO80YGL150C 4470 nt2.03□□□□□ -2.08
TY1A-ER1P0CX71 TAH1YCR060W 336 nt2.02□□□□□ -2.09
TY1A-ER1P0CX71 STB6YKL072W 2301 nt2.01□□□□□ -2.09
TY1A-ER1P0CX71 YOR161W-AYOR161W-A 81 nt2.01□□□□□ -2.09
TY1A-ER1P0CX71 YML002WYML002W 2214 nt2□□□□□ -2.09
TY1A-ER1P0CX71 YHR180W-AYHR180W-A 183 nt1.99□□□□□ -2.09
TY1A-ER1P0CX71 PAU10YDR542W 363 nt1.98□□□□□ -2.09
TY1A-ER1P0CX71 PAU11YGL261C 363 nt1.98□□□□□ -2.09
TY1A-ER1P0CX71 YHR131W-AYHR131W-A 246 nt1.98□□□□□ -2.09
TY1A-ER1P0CX71 PAU4YLR461W 363 nt1.98□□□□□ -2.09
TY1A-ER1P0CX71 SEC16YPL085W 6588 nt1.98□□□□□ -2.09
TY1A-ER1P0CX71 YAR009CYAR009C 3591 nt1.98□□□□□ -2.09
TY1A-ER1P0CX71 SPP41YDR464W 4308 nt1.98□□□□□ -2.09
TY1A-ER1P0CX71 MYO2YOR326W 4725 nt1.97□□□□□ -2.09
TY1A-ER1P0CX71 SGS1YMR190C 4344 nt1.97□□□□□ -2.09
TY1A-ER1P0CX71 SLX4YLR135W 2247 nt1.97□□□□□ -2.09
TY1A-ER1P0CX71 tM(CAU)Q2tM(CAU)Q2 78 nt1.97□□□□□ -2.09
TY1A-ER1P0CX71 UBP2YOR124C 3819 nt1.96□□□□□ -2.1
TY1A-ER1P0CX71 EAF1YDR359C 2949 nt1.95□□□□□ -2.1
TY1A-ER1P0CX71 ATG9YDL149W 2994 nt1.95□□□□□ -2.1
TY1A-ER1P0CX71 YJL052C-AYJL052C-A 120 nt1.95□□□□□ -2.1
TY1A-ER1P0CX71 PDR8YLR266C 2106 nt1.95□□□□□ -2.1
TY1A-ER1P0CX71 TFC3YAL001C 3483 nt1.95□□□□□ -2.1
TY1A-ER1P0CX71 MGA2YIR033W 3342 nt1.94□□□□□ -2.1
TY1A-ER1P0CX71 DGR1YNL130C-A 147 nt1.94□□□□□ -2.1
TY1A-ER1P0CX71 snR39BsnR39B 96 nt1.94□□□□□ -2.1
TY1A-ER1P0CX71 USO1YDL058W 5373 nt1.94□□□□□ -2.1
TY1A-ER1P0CX71 RGA1YOR127W 3024 nt1.93□□□□□ -2.1
TY1A-ER1P0CX71 YGL063C-AYGL063C-A 150 nt1.93□□□□□ -2.1
TY1A-ER1P0CX71 SEC21YNL287W 2808 nt1.92□□□□□ -2.1
TY1A-ER1P0CX71 UBR2YLR024C 5619 nt1.92□□□□□ -2.1
TY1A-ER1P0CX71 DBP10YDL031W 2988 nt1.92□□□□□ -2.1
TY1A-ER1P0CX71 MSB1YOR188W 3414 nt1.92□□□□□ -2.1
TY1A-ER1P0CX71 RTP1YMR185W 2946 nt1.91□□□□□ -2.1
TY1A-ER1P0CX71 SMC4YLR086W 4257 nt1.91□□□□□ -2.1
TY1A-ER1P0CX71 SKI3YPR189W 4299 nt1.91□□□□□ -2.1
TY1A-ER1P0CX71 YLR232WYLR232W 348 nt1.9□□□□□ -2.11
TY1A-ER1P0CX71 SEC31YDL195W 3822 nt1.9□□□□□ -2.11
TY1A-ER1P0CX71 YIL142C-AYIL142C-A 333 nt1.89□□□□□ -2.11
TY1A-ER1P0CX71 NOP9YJL010C 2001 nt1.89□□□□□ -2.11
TY1A-ER1P0CX71 YLR422WYLR422W 5799 nt1.88□□□□□ -2.11
TY1A-ER1P0CX71 snR14snR14 160 nt1.88□□□□□ -2.11
TY1A-ER1P0CX71 FYV10YIL097W 1551 nt1.88□□□□□ -2.11
TY1A-ER1P0CX71 UFD4YKL010C 4452 nt1.88□□□□□ -2.11
TY1A-ER1P0CX71 tF(GAA)DtF(GAA)D 73 nt1.87□□□□□ -2.11
TY1A-ER1P0CX71 tF(GAA)NtF(GAA)N 73 nt1.87□□□□□ -2.11
TY1A-ER1P0CX71 PDR3YBL005W 2931 nt1.87□□□□□ -2.11
TY1A-ER1P0CX71 YCS4YLR272C 3531 nt1.86□□□□□ -2.11
TY1A-ER1P0CX71 YLR041WYLR041W 321 nt1.86□□□□□ -2.11
TY1A-ER1P0CX71 CHS1YNL192W 3396 nt1.85□□□□□ -2.11
TY1A-ER1P0CX71 TOR2YKL203C 7425 nt1.85□□□□□ -2.11
TY1A-ER1P0CX71 STO1YMR125W 2586 nt1.85□□□□□ -2.11
TY1A-ER1P0CX71 RPL26BYGR034W 384 nt1.85□□□□□ -2.11
TY1A-ER1P0CX71 YJL127W-AYJL127W-A 117 nt1.85□□□□□ -2.11
TY1A-ER1P0CX71 snR190snR190 190 nt1.85□□□□□ -2.11
TY1A-ER1P0CX71 SCD5YOR329C 2619 nt1.85□□□□□ -2.11
TY1A-ER1P0CX71 ROM2YLR371W 4071 nt1.84□□□□□ -2.11
TY1A-ER1P0CX71 WAR1YML076C 2835 nt1.84□□□□□ -2.12
TY1A-ER1P0CX71 NEO1YIL048W 3456 nt1.83□□□□□ -2.12
TY1A-ER1P0CX71 KCS1YDR017C 3153 nt1.83□□□□□ -2.12
TY1A-ER1P0CX71 KAP122YGL016W 3246 nt1.82□□□□□ -2.12
TY1A-ER1P0CX71 RCO1YMR075W 2055 nt1.82□□□□□ -2.12
TY1A-ER1P0CX71 SET3YKR029C 2256 nt1.82□□□□□ -2.12
TY1A-ER1P0CX71 PDR11YIL013C 4236 nt1.81□□□□□ -2.12
TY1A-ER1P0CX71 APL3YBL037W 3078 nt1.81□□□□□ -2.12
TY1A-ER1P0CX71 tS(GCU)Q1tS(GCU)Q1 86 nt1.81□□□□□ -2.12
TY1A-ER1P0CX71 TMA7YLR262C-A 195 nt1.81□□□□□ -2.12
TY1A-ER1P0CX71 KAP120YPL125W 3099 nt1.81□□□□□ -2.12
TY1A-ER1P0CX71 BPH1YCR032W 6504 nt1.8□□□□□ -2.12
TY1A-ER1P0CX71 YHR214C-BYHR214C-B 5382 nt1.8□□□□□ -2.12
TY1A-ER1P0CX71 CDC25YLR310C 4770 nt1.8□□□□□ -2.12
TY1A-ER1P0CX71 BIR1YJR089W 2865 nt1.78□□□□□ -2.12
TY1A-ER1P0CX71 YDR210WYDR210W 228 nt1.78□□□□□ -2.12
TY1A-ER1P0CX71 YGR146C-AYGR146C-A 162 nt1.78□□□□□ -2.12
TY1A-ER1P0CX71 YLL066W-BYLL066W-B 171 nt1.78□□□□□ -2.12
TY1A-ER1P0CX71 RPM2YML091C 3609 nt1.77□□□□□ -2.13
TY1A-ER1P0CX71 NUP157YER105C 4176 nt1.77□□□□□ -2.13
TY1A-ER1P0CX71 YNL266WYNL266W 420 nt1.76□□□□□ -2.13
TY1A-ER1P0CX71 YOL019W-AYOL019W-A 153 nt1.76□□□□□ -2.13
TY1A-ER1P0CX71 YMR045CYMR045C 5268 nt1.75□□□□□ -2.13
TY1A-ER1P0CX71 GEA2YEL022W 4380 nt1.75□□□□□ -2.13
TY1A-ER1P0CX71 FKS3YMR306W 5358 nt1.75□□□□□ -2.13
TY1A-ER1P0CX71 snR81snR81 201 nt1.75□□□□□ -2.13
TY1A-ER1P0CX71 YBR200W-AYBR200W-A 165 nt1.75□□□□□ -2.13
TY1A-ER1P0CX71 BRE1YDL074C 2103 nt1.75□□□□□ -2.13
TY1A-ER1P0CX71 IRC20YLR247C 4671 nt1.74□□□□□ -2.13
TY1A-ER1P0CX71 SEC1YDR164C 2175 nt1.74□□□□□ -2.13
TY1A-ER1P0CX71 COG6YNL041C 2520 nt1.73□□□□□ -2.13
TY1A-ER1P0CX71 tW(CCA)G1tW(CCA)G1 72 nt1.73□□□□□ -2.13
TY1A-ER1P0CX71 tW(CCA)G2tW(CCA)G2 72 nt1.73□□□□□ -2.13
TY1A-ER1P0CX71 tW(CCA)JtW(CCA)J 72 nt1.73□□□□□ -2.13
TY1A-ER1P0CX71 tW(CCA)KtW(CCA)K 72 nt1.73□□□□□ -2.13
TY1A-ER1P0CX71 tW(CCA)MtW(CCA)M 72 nt1.73□□□□□ -2.13
TY1A-ER1P0CX71 tW(CCA)PtW(CCA)P 72 nt1.73□□□□□ -2.13
TY1A-ER1P0CX71 YAL037C-AYAL037C-A 93 nt1.73□□□□□ -2.13
Retrieved 100 of 7,029 protein–RNA pairs in 25.4 ms