Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC19.36■□□□□ 0.69
LSM1O15116 AL356652.1-201ENST00000615962 565 ntBASIC19.36■□□□□ 0.69
LSM1O15116 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC19.36■□□□□ 0.69
LSM1O15116 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LSM1O15116 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC19.36■□□□□ 0.69
LSM1O15116 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LSM1O15116 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
LSM1O15116 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LSM1O15116 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LSM1O15116 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
LSM1O15116 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
LSM1O15116 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
LSM1O15116 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC19.35■□□□□ 0.69
LSM1O15116 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
LSM1O15116 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
LSM1O15116 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
LSM1O15116 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
LSM1O15116 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC19.35■□□□□ 0.69
LSM1O15116 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
LSM1O15116 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC19.35■□□□□ 0.69
LSM1O15116 BRI3-207ENST00000539286 699 ntTSL 2 BASIC19.35■□□□□ 0.69
LSM1O15116 NTF6G-201ENST00000591094 616 ntBASIC19.35■□□□□ 0.69
LSM1O15116 AL591742.1-201ENST00000604433 565 ntBASIC19.35■□□□□ 0.69
LSM1O15116 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LSM1O15116 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LSM1O15116 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
LSM1O15116 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LSM1O15116 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC19.35■□□□□ 0.69
LSM1O15116 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
LSM1O15116 CYP21A1P-202ENST00000354927 1481 ntBASIC19.35■□□□□ 0.69
LSM1O15116 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
LSM1O15116 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LSM1O15116 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LSM1O15116 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC19.34■□□□□ 0.69
LSM1O15116 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC19.34■□□□□ 0.69
LSM1O15116 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC19.34■□□□□ 0.69
LSM1O15116 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC19.34■□□□□ 0.69
LSM1O15116 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC19.34■□□□□ 0.69
LSM1O15116 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC19.34■□□□□ 0.69
LSM1O15116 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC19.34■□□□□ 0.69
LSM1O15116 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC19.34■□□□□ 0.69
LSM1O15116 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
LSM1O15116 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
LSM1O15116 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LSM1O15116 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LSM1O15116 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC19.34■□□□□ 0.69
LSM1O15116 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.69
LSM1O15116 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
LSM1O15116 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC19.33■□□□□ 0.69
LSM1O15116 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
LSM1O15116 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
LSM1O15116 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
LSM1O15116 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC19.33■□□□□ 0.68
LSM1O15116 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC19.33■□□□□ 0.68
LSM1O15116 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC19.33■□□□□ 0.68
LSM1O15116 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
LSM1O15116 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
LSM1O15116 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
LSM1O15116 CD37-204ENST00000535669 1674 ntTSL 2 BASIC19.33■□□□□ 0.68
LSM1O15116 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
LSM1O15116 TMEM179-206ENST00000616017 1645 ntBASIC19.33■□□□□ 0.68
LSM1O15116 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
LSM1O15116 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
LSM1O15116 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC19.32■□□□□ 0.68
LSM1O15116 AC034268.1-201ENST00000441047 882 ntBASIC19.32■□□□□ 0.68
LSM1O15116 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC19.32■□□□□ 0.68
LSM1O15116 AL162412.1-201ENST00000567129 965 ntBASIC19.32■□□□□ 0.68
LSM1O15116 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
LSM1O15116 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
LSM1O15116 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC19.32■□□□□ 0.68
LSM1O15116 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
LSM1O15116 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LSM1O15116 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
LSM1O15116 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LSM1O15116 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
LSM1O15116 STK25-205ENST00000405883 1904 ntTSL 2 BASIC19.31■□□□□ 0.68
LSM1O15116 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
LSM1O15116 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
LSM1O15116 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC19.31■□□□□ 0.68
LSM1O15116 AC007322.4-201ENST00000509611 723 ntBASIC19.31■□□□□ 0.68
LSM1O15116 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
LSM1O15116 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
LSM1O15116 DBI-210ENST00000542275 757 ntTSL 5 BASIC19.31■□□□□ 0.68
LSM1O15116 AC016405.3-201ENST00000607710 860 ntBASIC19.31■□□□□ 0.68
LSM1O15116 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
LSM1O15116 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
LSM1O15116 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC19.31■□□□□ 0.68
LSM1O15116 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
LSM1O15116 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
LSM1O15116 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC19.31■□□□□ 0.68
LSM1O15116 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LSM1O15116 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
LSM1O15116 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LSM1O15116 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LSM1O15116 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LSM1O15116 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
LSM1O15116 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC19.3■□□□□ 0.68
LSM1O15116 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LSM1O15116 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC19.3■□□□□ 0.68
LSM1O15116 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 61.3 ms