Protein–RNA interactions for Protein: Q08285

RRP40, Exosome complex component RRP40, yeastyeast

Known RBP Predictions only

Length 240 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RRP40Q08285 RRT1YBL048W 312 nt0.82□□□□□ -2.28
RRP40Q08285 YBR200W-AYBR200W-A 165 nt0.82□□□□□ -2.28
RRP40Q08285 SLY1YDR189W 2001 nt0.82□□□□□ -2.28
RRP40Q08285 AIM9YER080W 1884 nt0.82□□□□□ -2.28
RRP40Q08285 CYC7YEL039C 342 nt0.81□□□□□ -2.28
RRP40Q08285 IRC23YOR044W 474 nt0.81□□□□□ -2.28
RRP40Q08285 YOR199WYOR199W 330 nt0.81□□□□□ -2.28
RRP40Q08285 YPR153WYPR153W 423 nt0.81□□□□□ -2.28
RRP40Q08285 LCD1YDR499W 2244 nt0.81□□□□□ -2.28
RRP40Q08285 PDE2YOR360C 1581 nt0.8□□□□□ -2.28
RRP40Q08285 YDL158CYDL158C 309 nt0.8□□□□□ -2.28
RRP40Q08285 YHR130CYHR130C 336 nt0.8□□□□□ -2.28
RRP40Q08285 FIG4YNL325C 2640 nt0.8□□□□□ -2.28
RRP40Q08285 YEL050W-AYEL050W-A 192 nt0.79□□□□□ -2.28
RRP40Q08285 MMS4YBR098W 2076 nt0.78□□□□□ -2.28
RRP40Q08285 YDL073WYDL073W 2955 nt0.78□□□□□ -2.28
RRP40Q08285 CDC33YOL139C 642 nt0.78□□□□□ -2.28
RRP40Q08285 YOR029WYOR029W 336 nt0.78□□□□□ -2.28
RRP40Q08285 NPC2YDL046W 522 nt0.77□□□□□ -2.29
RRP40Q08285 AIM29YKR074W 468 nt0.77□□□□□ -2.29
RRP40Q08285 ZEO1YOL109W 342 nt0.77□□□□□ -2.29
RRP40Q08285 PAC1YOR269W 1485 nt0.77□□□□□ -2.29
RRP40Q08285 EFR3YMR212C 2349 nt0.77□□□□□ -2.29
RRP40Q08285 RPS27AYKL156W 249 nt0.76□□□□□ -2.29
RRP40Q08285 ZIP2YGL249W 2115 nt0.76□□□□□ -2.29
RRP40Q08285 SLI15YBR156C 2097 nt0.76□□□□□ -2.29
RRP40Q08285 YDL206WYDL206W 2289 nt0.75□□□□□ -2.29
RRP40Q08285 TIM13YGR181W 318 nt0.75□□□□□ -2.29
RRP40Q08285 YBL071CYBL071C 309 nt0.75□□□□□ -2.29
RRP40Q08285 RPS30BYOR182C 192 nt0.75□□□□□ -2.29
RRP40Q08285 YDL011CYDL011C 324 nt0.74□□□□□ -2.29
RRP40Q08285 WIP1YDR374W-A 270 nt0.74□□□□□ -2.29
RRP40Q08285 BI2Q0110 1272 nt0.74□□□□□ -2.29
RRP40Q08285 YGR290WYGR290W 444 nt0.74□□□□□ -2.29
RRP40Q08285 YHR125WYHR125W 306 nt0.74□□□□□ -2.29
RRP40Q08285 YIL142C-AYIL142C-A 333 nt0.74□□□□□ -2.29
RRP40Q08285 YKL202WYKL202W 582 nt0.74□□□□□ -2.29
RRP40Q08285 YMR141W-AYMR141W-A 225 nt0.74□□□□□ -2.29
RRP40Q08285 RIM20YOR275C 1986 nt0.74□□□□□ -2.29
RRP40Q08285 COG4YPR105C 2586 nt0.73□□□□□ -2.29
RRP40Q08285 YOR108C-AYOR108C-A 210 nt0.73□□□□□ -2.29
RRP40Q08285 snR54snR54 86 nt0.73□□□□□ -2.29
RRP40Q08285 PRP16YKR086W 3216 nt0.73□□□□□ -2.29
RRP40Q08285 OST1YJL002C 1431 nt0.72□□□□□ -2.29
RRP40Q08285 YJR003CYJR003C 1560 nt0.72□□□□□ -2.29
RRP40Q08285 YDL196WYDL196W 330 nt0.72□□□□□ -2.29
RRP40Q08285 YGR042WYGR042W 816 nt0.72□□□□□ -2.29
RRP40Q08285 YJL135WYJL135W 318 nt0.72□□□□□ -2.29
RRP40Q08285 YNL122CYNL122C 348 nt0.72□□□□□ -2.29
RRP40Q08285 PAN2YGL094C 3348 nt0.72□□□□□ -2.29
RRP40Q08285 NHP2YDL208W 471 nt0.71□□□□□ -2.3
RRP40Q08285 FYV7YLR068W 456 nt0.71□□□□□ -2.3
RRP40Q08285 YOL160WYOL160W 342 nt0.71□□□□□ -2.3
RRP40Q08285 SEC1YDR164C 2175 nt0.7□□□□□ -2.3
RRP40Q08285 INA22YIR024C 651 nt0.7□□□□□ -2.3
RRP40Q08285 YLR287CYLR287C 1068 nt0.7□□□□□ -2.3
RRP40Q08285 YOR192C-CYOR192C-C 237 nt0.7□□□□□ -2.3
RRP40Q08285 WAR1YML076C 2835 nt0.69□□□□□ -2.3
RRP40Q08285 YDR521WYDR521W 336 nt0.69□□□□□ -2.3
RRP40Q08285 YJL020W-AYJL020W-A 258 nt0.69□□□□□ -2.3
RRP40Q08285 CMC4YMR194C-B 222 nt0.69□□□□□ -2.3
RRP40Q08285 YOL013W-BYOL013W-B 291 nt0.69□□□□□ -2.3
RRP40Q08285 SWF1YDR126W 1011 nt0.68□□□□□ -2.3
RRP40Q08285 YLR171WYLR171W 390 nt0.68□□□□□ -2.3
RRP40Q08285 YMR290W-AYMR290W-A 348 nt0.68□□□□□ -2.3
RRP40Q08285 RPB10YOR210W 213 nt0.68□□□□□ -2.3
RRP40Q08285 GPG1YGL121C 381 nt0.67□□□□□ -2.3
RRP40Q08285 YOR072W-AYOR072W-A 249 nt0.67□□□□□ -2.3
RRP40Q08285 LOA1YPR139C 903 nt0.67□□□□□ -2.3
RRP40Q08285 DIE2YGR227W 1578 nt0.66□□□□□ -2.3
RRP40Q08285 YEL030C-AYEL030C-A 315 nt0.66□□□□□ -2.3
RRP40Q08285 ISD11YER048W-A 285 nt0.66□□□□□ -2.3
RRP40Q08285 YHL042WYHL042W 453 nt0.66□□□□□ -2.3
RRP40Q08285 tT(AGU)BtT(AGU)B 73 nt0.66□□□□□ -2.3
RRP40Q08285 tT(AGU)CtT(AGU)C 73 nt0.66□□□□□ -2.3
RRP40Q08285 tT(AGU)DtT(AGU)D 73 nt0.66□□□□□ -2.3
RRP40Q08285 tT(AGU)HtT(AGU)H 73 nt0.66□□□□□ -2.3
RRP40Q08285 tT(AGU)I1tT(AGU)I1 73 nt0.66□□□□□ -2.3
RRP40Q08285 tT(AGU)I2tT(AGU)I2 73 nt0.66□□□□□ -2.3
RRP40Q08285 tT(AGU)JtT(AGU)J 73 nt0.66□□□□□ -2.3
RRP40Q08285 tT(AGU)N1tT(AGU)N1 73 nt0.66□□□□□ -2.3
RRP40Q08285 tT(AGU)N2tT(AGU)N2 73 nt0.66□□□□□ -2.3
RRP40Q08285 tT(AGU)O1tT(AGU)O1 73 nt0.66□□□□□ -2.3
RRP40Q08285 tT(AGU)O2tT(AGU)O2 73 nt0.66□□□□□ -2.3
RRP40Q08285 YPL261CYPL261C 309 nt0.66□□□□□ -2.3
RRP40Q08285 snR189snR189 189 nt0.66□□□□□ -2.3
RRP40Q08285 snR51snR51 107 nt0.66□□□□□ -2.3
RRP40Q08285 RKR1YMR247C 4689 nt0.66□□□□□ -2.3
RRP40Q08285 ECL1YGR146C 636 nt0.65□□□□□ -2.31
RRP40Q08285 YAL016C-BYAL016C-B 186 nt0.65□□□□□ -2.31
RRP40Q08285 RAD34YDR314C 2079 nt0.65□□□□□ -2.31
RRP40Q08285 YMR272W-AYMR272W-A 114 nt0.64□□□□□ -2.31
RRP40Q08285 DBP6YNR038W 1890 nt0.64□□□□□ -2.31
RRP40Q08285 PKH2YOL100W 3246 nt0.64□□□□□ -2.31
RRP40Q08285 snR72snR72 98 nt0.63□□□□□ -2.31
RRP40Q08285 CBS1YDL069C 690 nt0.63□□□□□ -2.31
RRP40Q08285 SDH7YDR511W 402 nt0.63□□□□□ -2.31
RRP40Q08285 YER006C-AYER006C-A 318 nt0.63□□□□□ -2.31
RRP40Q08285 ALG13YGL047W 609 nt0.63□□□□□ -2.31
RRP40Q08285 UBC7YMR022W 498 nt0.63□□□□□ -2.31
Retrieved 100 of 7,029 protein–RNA pairs in 67.5 ms