Protein–RNA interactions for Protein: P34223

SHP1, UBX domain-containing protein 1, yeastyeast

Predictions only

Length 423 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SHP1P34223 ENV11YGR071C 2583 nt1.62□□□□□ -2.15
SHP1P34223 YLR035C-AYLR035C-A 3468 nt1.62□□□□□ -2.15
SHP1P34223 CHS1YNL192W 3396 nt1.62□□□□□ -2.15
SHP1P34223 TDA9YML081W 3756 nt1.61□□□□□ -2.15
SHP1P34223 YDR426CYDR426C 378 nt1.61□□□□□ -2.15
SHP1P34223 YJL135WYJL135W 318 nt1.61□□□□□ -2.15
SHP1P34223 YPR002C-AYPR002C-A 198 nt1.61□□□□□ -2.15
SHP1P34223 PAU3YCR104W 375 nt1.6□□□□□ -2.15
SHP1P34223 NPC2YDL046W 522 nt1.6□□□□□ -2.15
SHP1P34223 YOR199WYOR199W 330 nt1.6□□□□□ -2.15
SHP1P34223 VPS15YBR097W 4365 nt1.6□□□□□ -2.15
SHP1P34223 MEC1YBR136W 7107 nt1.6□□□□□ -2.15
SHP1P34223 DGR2YKL121W 2559 nt1.59□□□□□ -2.15
SHP1P34223 YDR048CYDR048C 315 nt1.59□□□□□ -2.15
SHP1P34223 YDR183C-AYDR183C-A 258 nt1.59□□□□□ -2.15
SHP1P34223 PIG1YLR273C 1947 nt1.59□□□□□ -2.15
SHP1P34223 SAS3YBL052C 2496 nt1.58□□□□□ -2.16
SHP1P34223 YDR182W-AYDR182W-A 204 nt1.58□□□□□ -2.16
SHP1P34223 PAU2YEL049W 363 nt1.58□□□□□ -2.16
SHP1P34223 STF2YGR008C 255 nt1.58□□□□□ -2.16
SHP1P34223 DNF3YMR162C 4971 nt1.58□□□□□ -2.16
SHP1P34223 APL2YKL135C 2181 nt1.57□□□□□ -2.16
SHP1P34223 RPL31AYDL075W 342 nt1.57□□□□□ -2.16
SHP1P34223 MAM33YIL070C 801 nt1.56□□□□□ -2.16
SHP1P34223 YAR029WYAR029W 225 nt1.56□□□□□ -2.16
SHP1P34223 YGR130CYGR130C 2451 nt1.56□□□□□ -2.16
SHP1P34223 SKI3YPR189W 4299 nt1.55□□□□□ -2.16
SHP1P34223 YFL063WYFL063W 456 nt1.55□□□□□ -2.16
SHP1P34223 YMR242W-AYMR242W-A 90 nt1.55□□□□□ -2.16
SHP1P34223 AI5_ALPHAQ0070 1893 nt1.54□□□□□ -2.16
SHP1P34223 ZIP2YGL249W 2115 nt1.54□□□□□ -2.16
SHP1P34223 RPL39YJL189W 156 nt1.54□□□□□ -2.16
SHP1P34223 YOL160WYOL160W 342 nt1.54□□□□□ -2.16
SHP1P34223 STE5YDR103W 2754 nt1.53□□□□□ -2.16
SHP1P34223 IRA1YBR140C 9279 nt1.53□□□□□ -2.16
SHP1P34223 NIP100YPL174C 2607 nt1.53□□□□□ -2.17
SHP1P34223 HTL1YCR020W-B 237 nt1.52□□□□□ -2.17
SHP1P34223 EMC5YIL027C 426 nt1.52□□□□□ -2.17
SHP1P34223 SDH2YLL041C 801 nt1.52□□□□□ -2.17
SHP1P34223 YMR031W-AYMR031W-A 327 nt1.52□□□□□ -2.17
SHP1P34223 YMR175W-AYMR175W-A 195 nt1.52□□□□□ -2.17
SHP1P34223 YBR174CYBR174C 315 nt1.52□□□□□ -2.17
SHP1P34223 KCS1YDR017C 3153 nt1.52□□□□□ -2.17
SHP1P34223 TTI1YKL033W 3117 nt1.52□□□□□ -2.17
SHP1P34223 SPC98YNL126W 2541 nt1.51□□□□□ -2.17
SHP1P34223 tH(GUG)E1tH(GUG)E1 72 nt1.51□□□□□ -2.17
SHP1P34223 tH(GUG)E2tH(GUG)E2 72 nt1.51□□□□□ -2.17
SHP1P34223 tH(GUG)G1tH(GUG)G1 72 nt1.51□□□□□ -2.17
SHP1P34223 tH(GUG)G2tH(GUG)G2 72 nt1.51□□□□□ -2.17
SHP1P34223 tH(GUG)HtH(GUG)H 72 nt1.51□□□□□ -2.17
SHP1P34223 tH(GUG)KtH(GUG)K 72 nt1.51□□□□□ -2.17
SHP1P34223 tH(GUG)MtH(GUG)M 72 nt1.51□□□□□ -2.17
SHP1P34223 YOR108C-AYOR108C-A 210 nt1.51□□□□□ -2.17
SHP1P34223 SPO24YPR036W-A 204 nt1.51□□□□□ -2.17
SHP1P34223 MSH3YCR092C 3057 nt1.51□□□□□ -2.17
SHP1P34223 DBP6YNR038W 1890 nt1.5□□□□□ -2.17
SHP1P34223 YGR109W-BYGR109W-B 4644 nt1.5□□□□□ -2.17
SHP1P34223 MAD1YGL086W 2250 nt1.5□□□□□ -2.17
SHP1P34223 YGL149WYGL149W 306 nt1.49□□□□□ -2.17
SHP1P34223 YJL022WYJL022W 309 nt1.49□□□□□ -2.17
SHP1P34223 COF1YLL050C 432 nt1.49□□□□□ -2.17
SHP1P34223 YMR193C-AYMR193C-A 387 nt1.49□□□□□ -2.17
SHP1P34223 YNL277W-AYNL277W-A 189 nt1.49□□□□□ -2.17
SHP1P34223 RAD50YNL250W 3939 nt1.49□□□□□ -2.17
SHP1P34223 SMC4YLR086W 4257 nt1.49□□□□□ -2.17
SHP1P34223 CDC25YLR310C 4770 nt1.48□□□□□ -2.17
SHP1P34223 RAD34YDR314C 2079 nt1.48□□□□□ -2.17
SHP1P34223 YPR063CYPR063C 423 nt1.48□□□□□ -2.17
SHP1P34223 ALK1YGL021W 2283 nt1.48□□□□□ -2.17
SHP1P34223 NOC3YLR002C 1992 nt1.48□□□□□ -2.17
SHP1P34223 UFD2YDL190C 2886 nt1.48□□□□□ -2.17
SHP1P34223 OST1YJL002C 1431 nt1.48□□□□□ -2.17
SHP1P34223 MPT5YGL178W 2580 nt1.47□□□□□ -2.17
SHP1P34223 YGL217CYGL217C 342 nt1.47□□□□□ -2.17
SHP1P34223 NUT1YGL151W 3399 nt1.47□□□□□ -2.17
SHP1P34223 SEC5YDR166C 2916 nt1.46□□□□□ -2.18
SHP1P34223 snR65snR65 100 nt1.46□□□□□ -2.18
SHP1P34223 YMR230W-AYMR230W-A 189 nt1.46□□□□□ -2.18
SHP1P34223 YMR290W-AYMR290W-A 348 nt1.46□□□□□ -2.18
SHP1P34223 KAP122YGL016W 3246 nt1.46□□□□□ -2.18
SHP1P34223 SPC110YDR356W 2835 nt1.46□□□□□ -2.18
SHP1P34223 PMD1YER132C 5262 nt1.46□□□□□ -2.18
SHP1P34223 POL5YEL055C 3069 nt1.45□□□□□ -2.18
SHP1P34223 YDL211CYDL211C 1119 nt1.45□□□□□ -2.18
SHP1P34223 YDR344CYDR344C 444 nt1.45□□□□□ -2.18
SHP1P34223 YIL032CYIL032C 357 nt1.45□□□□□ -2.18
SHP1P34223 YOR376WYOR376W 369 nt1.45□□□□□ -2.18
SHP1P34223 SCW11YGL028C 1629 nt1.44□□□□□ -2.18
SHP1P34223 YOR019WYOR019W 2193 nt1.44□□□□□ -2.18
SHP1P34223 NCA2YPR155C 1851 nt1.44□□□□□ -2.18
SHP1P34223 SSS1YDR086C 243 nt1.44□□□□□ -2.18
SHP1P34223 VPS55YJR044C 423 nt1.44□□□□□ -2.18
SHP1P34223 YOR231C-AYOR231C-A 201 nt1.44□□□□□ -2.18
SHP1P34223 YPR010C-AYPR010C-A 219 nt1.44□□□□□ -2.18
SHP1P34223 SLX4YLR135W 2247 nt1.43□□□□□ -2.18
SHP1P34223 YLR140WYLR140W 327 nt1.43□□□□□ -2.18
SHP1P34223 SLI15YBR156C 2097 nt1.43□□□□□ -2.18
SHP1P34223 LAA1YJL207C 6045 nt1.42□□□□□ -2.18
SHP1P34223 tQ(UUG)E2tQ(UUG)E2 72 nt1.42□□□□□ -2.18
SHP1P34223 RPL34BYIL052C 366 nt1.42□□□□□ -2.18
Retrieved 100 of 7,029 protein–RNA pairs in 39.2 ms