Protein–RNA interactions for Protein: O43679

LDB2, LIM domain-binding protein 2, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB2O43679 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC20.4■□□□□ 0.86
LDB2O43679 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
LDB2O43679 BET1L-204ENST00000410108 637 ntTSL 3 BASIC20.4■□□□□ 0.86
LDB2O43679 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC20.4■□□□□ 0.86
LDB2O43679 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
LDB2O43679 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
LDB2O43679 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC20.4■□□□□ 0.86
LDB2O43679 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC20.4■□□□□ 0.86
LDB2O43679 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
LDB2O43679 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC20.4■□□□□ 0.86
LDB2O43679 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
LDB2O43679 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC20.4■□□□□ 0.86
LDB2O43679 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
LDB2O43679 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC20.39■□□□□ 0.86
LDB2O43679 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
LDB2O43679 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
LDB2O43679 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC20.39■□□□□ 0.86
LDB2O43679 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
LDB2O43679 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
LDB2O43679 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC20.39■□□□□ 0.85
LDB2O43679 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
LDB2O43679 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
LDB2O43679 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
LDB2O43679 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC20.39■□□□□ 0.85
LDB2O43679 AC069236.1-201ENST00000604339 616 ntBASIC20.39■□□□□ 0.85
LDB2O43679 AC005181.1-201ENST00000604782 1256 ntBASIC20.39■□□□□ 0.85
LDB2O43679 AL356652.1-201ENST00000615962 565 ntBASIC20.39■□□□□ 0.85
LDB2O43679 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
LDB2O43679 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
LDB2O43679 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC20.39■□□□□ 0.85
LDB2O43679 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC20.39■□□□□ 0.85
LDB2O43679 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC20.39■□□□□ 0.85
LDB2O43679 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
LDB2O43679 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC20.39■□□□□ 0.85
LDB2O43679 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
LDB2O43679 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
LDB2O43679 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC20.38■□□□□ 0.85
LDB2O43679 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
LDB2O43679 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
LDB2O43679 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
LDB2O43679 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
LDB2O43679 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
LDB2O43679 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
LDB2O43679 MCRIP2P1-201ENST00000394346 511 ntBASIC20.38■□□□□ 0.85
LDB2O43679 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
LDB2O43679 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC20.38■□□□□ 0.85
LDB2O43679 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
LDB2O43679 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC20.38■□□□□ 0.85
LDB2O43679 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
LDB2O43679 OR10C1-204ENST00000622521 1039 ntBASIC20.38■□□□□ 0.85
LDB2O43679 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC20.38■□□□□ 0.85
LDB2O43679 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
LDB2O43679 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
LDB2O43679 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
LDB2O43679 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
LDB2O43679 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC20.38■□□□□ 0.85
LDB2O43679 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC20.37■□□□□ 0.85
LDB2O43679 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LDB2O43679 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
LDB2O43679 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LDB2O43679 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
LDB2O43679 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC20.37■□□□□ 0.85
LDB2O43679 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
LDB2O43679 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LDB2O43679 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC20.37■□□□□ 0.85
LDB2O43679 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC20.37■□□□□ 0.85
LDB2O43679 PGM5P4-201ENST00000421970 445 ntBASIC20.37■□□□□ 0.85
LDB2O43679 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC20.37■□□□□ 0.85
LDB2O43679 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC20.37■□□□□ 0.85
LDB2O43679 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LDB2O43679 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC20.37■□□□□ 0.85
LDB2O43679 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
LDB2O43679 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC20.37■□□□□ 0.85
LDB2O43679 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
LDB2O43679 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC20.37■□□□□ 0.85
LDB2O43679 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LDB2O43679 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LDB2O43679 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC20.37■□□□□ 0.85
LDB2O43679 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
LDB2O43679 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
LDB2O43679 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
LDB2O43679 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LDB2O43679 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
LDB2O43679 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
LDB2O43679 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
LDB2O43679 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LDB2O43679 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LDB2O43679 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
LDB2O43679 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LDB2O43679 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
LDB2O43679 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC20.36■□□□□ 0.85
LDB2O43679 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
LDB2O43679 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LDB2O43679 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC20.36■□□□□ 0.85
LDB2O43679 AC026185.1-201ENST00000445748 174 ntBASIC20.36■□□□□ 0.85
LDB2O43679 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC20.36■□□□□ 0.85
LDB2O43679 AL050303.2-201ENST00000619798 666 ntBASIC20.36■□□□□ 0.85
LDB2O43679 AC008694.1-202ENST00000636953 945 ntBASIC20.36■□□□□ 0.85
LDB2O43679 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LDB2O43679 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC20.36■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 94.1 ms