Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC19.63■□□□□ 0.73
LSM1O15116 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
LSM1O15116 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC19.63■□□□□ 0.73
LSM1O15116 KRT18P20-201ENST00000548986 1279 ntBASIC19.63■□□□□ 0.73
LSM1O15116 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC19.63■□□□□ 0.73
LSM1O15116 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LSM1O15116 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC19.63■□□□□ 0.73
LSM1O15116 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
LSM1O15116 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC19.63■□□□□ 0.73
LSM1O15116 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LSM1O15116 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC19.62■□□□□ 0.73
LSM1O15116 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC19.62■□□□□ 0.73
LSM1O15116 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
LSM1O15116 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC19.62■□□□□ 0.73
LSM1O15116 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LSM1O15116 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LSM1O15116 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC19.62■□□□□ 0.73
LSM1O15116 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LSM1O15116 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC19.62■□□□□ 0.73
LSM1O15116 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC19.62■□□□□ 0.73
LSM1O15116 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC19.62■□□□□ 0.73
LSM1O15116 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LSM1O15116 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LSM1O15116 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
LSM1O15116 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LSM1O15116 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
LSM1O15116 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LSM1O15116 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
LSM1O15116 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC19.61■□□□□ 0.73
LSM1O15116 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LSM1O15116 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
LSM1O15116 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LSM1O15116 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LSM1O15116 COX20-201ENST00000366528 568 ntTSL 2 BASIC19.61■□□□□ 0.73
LSM1O15116 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
LSM1O15116 TESC-206ENST00000541210 936 ntTSL 3 BASIC19.61■□□□□ 0.73
LSM1O15116 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC19.61■□□□□ 0.73
LSM1O15116 SP2-202ENST00000613139 908 ntTSL 5 BASIC19.61■□□□□ 0.73
LSM1O15116 FGF8-207ENST00000618991 856 ntTSL 3 BASIC19.61■□□□□ 0.73
LSM1O15116 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC19.61■□□□□ 0.73
LSM1O15116 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC19.61■□□□□ 0.73
LSM1O15116 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC19.61■□□□□ 0.73
LSM1O15116 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LSM1O15116 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC19.61■□□□□ 0.73
LSM1O15116 BID-204ENST00000399767 2129 ntTSL 2 BASIC19.61■□□□□ 0.73
LSM1O15116 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
LSM1O15116 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
LSM1O15116 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
LSM1O15116 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
LSM1O15116 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
LSM1O15116 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
LSM1O15116 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
LSM1O15116 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
LSM1O15116 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC19.6■□□□□ 0.73
LSM1O15116 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC19.6■□□□□ 0.73
LSM1O15116 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC19.6■□□□□ 0.73
LSM1O15116 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC19.6■□□□□ 0.73
LSM1O15116 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC19.6■□□□□ 0.73
LSM1O15116 AC243732.1-201ENST00000612648 864 ntBASIC19.6■□□□□ 0.73
LSM1O15116 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
LSM1O15116 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC19.6■□□□□ 0.73
LSM1O15116 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LSM1O15116 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
LSM1O15116 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LSM1O15116 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
LSM1O15116 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC19.6■□□□□ 0.73
LSM1O15116 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LSM1O15116 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC19.6■□□□□ 0.73
LSM1O15116 AC004854.2-201ENST00000608450 1441 ntBASIC19.59■□□□□ 0.73
LSM1O15116 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
LSM1O15116 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LSM1O15116 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC19.59■□□□□ 0.73
LSM1O15116 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC19.59■□□□□ 0.73
LSM1O15116 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LSM1O15116 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LSM1O15116 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
LSM1O15116 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
LSM1O15116 AC091799.1-201ENST00000422823 811 ntBASIC19.59■□□□□ 0.73
LSM1O15116 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC19.59■□□□□ 0.73
LSM1O15116 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC19.59■□□□□ 0.73
LSM1O15116 KRT18P14-201ENST00000534205 1250 ntBASIC19.59■□□□□ 0.73
LSM1O15116 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC19.59■□□□□ 0.73
LSM1O15116 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC19.59■□□□□ 0.73
LSM1O15116 RAB43-208ENST00000615093 783 ntTSL 5 BASIC19.59■□□□□ 0.73
LSM1O15116 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
LSM1O15116 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LSM1O15116 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
LSM1O15116 AL158211.5-201ENST00000623583 2518 ntBASIC19.59■□□□□ 0.73
LSM1O15116 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC19.59■□□□□ 0.73
LSM1O15116 RBM17P2-201ENST00000616397 1405 ntBASIC19.59■□□□□ 0.73
LSM1O15116 TCF3P1-201ENST00000423021 1937 ntBASIC19.59■□□□□ 0.73
LSM1O15116 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC19.58■□□□□ 0.73
LSM1O15116 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.73
LSM1O15116 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
LSM1O15116 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC19.58■□□□□ 0.73
LSM1O15116 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC19.58■□□□□ 0.73
LSM1O15116 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
LSM1O15116 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
LSM1O15116 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
LSM1O15116 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC19.58■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms