Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC31.33■■■□□ 2.61
COL17A1Q9UMD9 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC31.33■■■□□ 2.61
COL17A1Q9UMD9 ANOS2P-203ENST00000472227 1816 ntBASIC31.33■■■□□ 2.61
COL17A1Q9UMD9 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC31.33■■■□□ 2.61
COL17A1Q9UMD9 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC31.33■■■□□ 2.61
COL17A1Q9UMD9 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC31.33■■■□□ 2.61
COL17A1Q9UMD9 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC31.33■■■□□ 2.61
COL17A1Q9UMD9 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC31.32■■■□□ 2.61
COL17A1Q9UMD9 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
COL17A1Q9UMD9 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC31.32■■■□□ 2.6
COL17A1Q9UMD9 AC022616.7-201ENST00000525383 220 ntBASIC31.32■■■□□ 2.6
COL17A1Q9UMD9 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC31.32■■■□□ 2.6
COL17A1Q9UMD9 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC31.32■■■□□ 2.6
COL17A1Q9UMD9 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC31.32■■■□□ 2.6
COL17A1Q9UMD9 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC31.32■■■□□ 2.6
COL17A1Q9UMD9 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC31.32■■■□□ 2.6
COL17A1Q9UMD9 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC31.31■■■□□ 2.6
COL17A1Q9UMD9 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
COL17A1Q9UMD9 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
COL17A1Q9UMD9 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
COL17A1Q9UMD9 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC31.31■■■□□ 2.6
COL17A1Q9UMD9 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
COL17A1Q9UMD9 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC31.31■■■□□ 2.6
COL17A1Q9UMD9 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC31.31■■■□□ 2.6
COL17A1Q9UMD9 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
COL17A1Q9UMD9 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
COL17A1Q9UMD9 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
COL17A1Q9UMD9 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
COL17A1Q9UMD9 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
COL17A1Q9UMD9 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC31.3■■■□□ 2.6
COL17A1Q9UMD9 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC31.3■■■□□ 2.6
COL17A1Q9UMD9 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
COL17A1Q9UMD9 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC31.3■■■□□ 2.6
COL17A1Q9UMD9 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC31.3■■■□□ 2.6
COL17A1Q9UMD9 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC31.3■■■□□ 2.6
COL17A1Q9UMD9 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
COL17A1Q9UMD9 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC31.29■■■□□ 2.6
COL17A1Q9UMD9 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC31.29■■■□□ 2.6
COL17A1Q9UMD9 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC31.29■■■□□ 2.6
COL17A1Q9UMD9 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
COL17A1Q9UMD9 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC31.29■■■□□ 2.6
COL17A1Q9UMD9 AC009947.2-201ENST00000444014 672 ntBASIC31.29■■■□□ 2.6
COL17A1Q9UMD9 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC31.29■■■□□ 2.6
COL17A1Q9UMD9 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
COL17A1Q9UMD9 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC31.29■■■□□ 2.6
COL17A1Q9UMD9 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC31.29■■■□□ 2.6
COL17A1Q9UMD9 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC31.29■■■□□ 2.6
COL17A1Q9UMD9 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
COL17A1Q9UMD9 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
COL17A1Q9UMD9 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC31.29■■■□□ 2.6
COL17A1Q9UMD9 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC31.29■■■□□ 2.6
COL17A1Q9UMD9 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
COL17A1Q9UMD9 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
COL17A1Q9UMD9 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
COL17A1Q9UMD9 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
COL17A1Q9UMD9 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
COL17A1Q9UMD9 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC31.28■■■□□ 2.6
COL17A1Q9UMD9 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
COL17A1Q9UMD9 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
COL17A1Q9UMD9 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC31.28■■■□□ 2.6
COL17A1Q9UMD9 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
COL17A1Q9UMD9 AC116562.2-201ENST00000507042 360 ntBASIC31.27■■■□□ 2.6
COL17A1Q9UMD9 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC31.27■■■□□ 2.6
COL17A1Q9UMD9 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC31.27■■■□□ 2.6
COL17A1Q9UMD9 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC31.27■■■□□ 2.6
COL17A1Q9UMD9 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC31.27■■■□□ 2.6
COL17A1Q9UMD9 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
COL17A1Q9UMD9 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
COL17A1Q9UMD9 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
COL17A1Q9UMD9 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
COL17A1Q9UMD9 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
COL17A1Q9UMD9 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC31.27■■■□□ 2.6
COL17A1Q9UMD9 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
COL17A1Q9UMD9 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC31.27■■■□□ 2.6
COL17A1Q9UMD9 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC31.27■■■□□ 2.6
COL17A1Q9UMD9 LGALS8-AS1-201ENST00000487567 1457 ntBASIC31.26■■■□□ 2.6
COL17A1Q9UMD9 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC31.26■■■□□ 2.59
COL17A1Q9UMD9 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC31.26■■■□□ 2.59
COL17A1Q9UMD9 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC31.26■■■□□ 2.59
COL17A1Q9UMD9 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
COL17A1Q9UMD9 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC31.26■■■□□ 2.59
COL17A1Q9UMD9 AC063952.2-201ENST00000498792 1227 ntBASIC31.26■■■□□ 2.59
COL17A1Q9UMD9 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC31.26■■■□□ 2.59
COL17A1Q9UMD9 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC31.26■■■□□ 2.59
COL17A1Q9UMD9 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
COL17A1Q9UMD9 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC31.25■■■□□ 2.59
COL17A1Q9UMD9 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC31.25■■■□□ 2.59
COL17A1Q9UMD9 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC31.25■■■□□ 2.59
COL17A1Q9UMD9 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC31.25■■■□□ 2.59
COL17A1Q9UMD9 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC31.25■■■□□ 2.59
COL17A1Q9UMD9 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
COL17A1Q9UMD9 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
COL17A1Q9UMD9 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
COL17A1Q9UMD9 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
COL17A1Q9UMD9 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
COL17A1Q9UMD9 COPS8-203ENST00000409334 794 ntTSL 5 BASIC31.24■■■□□ 2.59
COL17A1Q9UMD9 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC31.24■■■□□ 2.59
COL17A1Q9UMD9 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC31.24■■■□□ 2.59
COL17A1Q9UMD9 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC31.24■■■□□ 2.59
COL17A1Q9UMD9 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC31.24■■■□□ 2.59
Retrieved 100 of 98,524 protein–RNA pairs in 60.4 ms