Protein–RNA interactions for Protein: O43679

LDB2, LIM domain-binding protein 2, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB2O43679 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LDB2O43679 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
LDB2O43679 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
LDB2O43679 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
LDB2O43679 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC20.5■□□□□ 0.87
LDB2O43679 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC20.5■□□□□ 0.87
LDB2O43679 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC20.5■□□□□ 0.87
LDB2O43679 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LDB2O43679 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC20.5■□□□□ 0.87
LDB2O43679 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC20.5■□□□□ 0.87
LDB2O43679 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
LDB2O43679 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC20.49■□□□□ 0.87
LDB2O43679 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LDB2O43679 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LDB2O43679 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
LDB2O43679 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
LDB2O43679 AC004911.1-201ENST00000416316 871 ntBASIC20.49■□□□□ 0.87
LDB2O43679 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC20.49■□□□□ 0.87
LDB2O43679 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
LDB2O43679 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC20.49■□□□□ 0.87
LDB2O43679 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC20.49■□□□□ 0.87
LDB2O43679 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC20.49■□□□□ 0.87
LDB2O43679 AC231657.2-201ENST00000624556 255 ntBASIC20.49■□□□□ 0.87
LDB2O43679 PARP1-210ENST00000629232 477 ntTSL 5 BASIC20.49■□□□□ 0.87
LDB2O43679 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LDB2O43679 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LDB2O43679 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
LDB2O43679 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC20.49■□□□□ 0.87
LDB2O43679 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC20.49■□□□□ 0.87
LDB2O43679 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LDB2O43679 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
LDB2O43679 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
LDB2O43679 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC20.48■□□□□ 0.87
LDB2O43679 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC20.48■□□□□ 0.87
LDB2O43679 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC20.48■□□□□ 0.87
LDB2O43679 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
LDB2O43679 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
LDB2O43679 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC20.48■□□□□ 0.87
LDB2O43679 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
LDB2O43679 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC20.48■□□□□ 0.87
LDB2O43679 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
LDB2O43679 PBX1-209ENST00000485769 834 ntTSL 2 BASIC20.48■□□□□ 0.87
LDB2O43679 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC20.48■□□□□ 0.87
LDB2O43679 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC20.48■□□□□ 0.87
LDB2O43679 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC20.48■□□□□ 0.87
LDB2O43679 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC20.48■□□□□ 0.87
LDB2O43679 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LDB2O43679 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
LDB2O43679 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC20.47■□□□□ 0.87
LDB2O43679 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC20.47■□□□□ 0.87
LDB2O43679 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LDB2O43679 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LDB2O43679 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LDB2O43679 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC20.47■□□□□ 0.87
LDB2O43679 METTL26-203ENST00000397664 604 ntTSL 2 BASIC20.47■□□□□ 0.87
LDB2O43679 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
LDB2O43679 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC20.47■□□□□ 0.87
LDB2O43679 RARRES2P4-201ENST00000514074 484 ntBASIC20.47■□□□□ 0.87
LDB2O43679 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC20.47■□□□□ 0.87
LDB2O43679 MAZ-216ENST00000616501 991 ntTSL 5 BASIC20.47■□□□□ 0.87
LDB2O43679 MDK-213ENST00000617138 635 ntTSL 2 BASIC20.47■□□□□ 0.87
LDB2O43679 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LDB2O43679 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
LDB2O43679 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC20.47■□□□□ 0.87
LDB2O43679 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
LDB2O43679 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
LDB2O43679 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC20.46■□□□□ 0.87
LDB2O43679 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
LDB2O43679 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC20.46■□□□□ 0.87
LDB2O43679 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
LDB2O43679 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LDB2O43679 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC20.46■□□□□ 0.87
LDB2O43679 AC007322.1-201ENST00000426983 750 ntBASIC20.46■□□□□ 0.87
LDB2O43679 APTR-203ENST00000430801 583 ntTSL 5 BASIC20.46■□□□□ 0.87
LDB2O43679 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC20.46■□□□□ 0.87
LDB2O43679 AC080038.1-201ENST00000611274 1154 ntBASIC20.46■□□□□ 0.87
LDB2O43679 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
LDB2O43679 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
LDB2O43679 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC20.46■□□□□ 0.87
LDB2O43679 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
LDB2O43679 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
LDB2O43679 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LDB2O43679 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LDB2O43679 DET1-207ENST00000564406 2315 ntTSL 2 BASIC20.45■□□□□ 0.87
LDB2O43679 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
LDB2O43679 KRT8P36-201ENST00000489121 1440 ntBASIC20.45■□□□□ 0.86
LDB2O43679 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
LDB2O43679 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
LDB2O43679 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC20.45■□□□□ 0.86
LDB2O43679 CYP21A1P-202ENST00000354927 1481 ntBASIC20.45■□□□□ 0.86
LDB2O43679 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
LDB2O43679 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
LDB2O43679 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
LDB2O43679 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC20.45■□□□□ 0.86
LDB2O43679 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
LDB2O43679 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC20.45■□□□□ 0.86
LDB2O43679 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
LDB2O43679 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
LDB2O43679 CYP2T1P-201ENST00000432607 1285 ntBASIC20.45■□□□□ 0.86
LDB2O43679 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC20.45■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms