Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 RHOF-204ENST00000537265 699 ntTSL 2 BASIC19.88■□□□□ 0.77
LSM1O15116 MIR6084-201ENST00000622012 110 ntBASIC19.88■□□□□ 0.77
LSM1O15116 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
LSM1O15116 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
LSM1O15116 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
LSM1O15116 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
LSM1O15116 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
LSM1O15116 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
LSM1O15116 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
LSM1O15116 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC19.87■□□□□ 0.77
LSM1O15116 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC19.87■□□□□ 0.77
LSM1O15116 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
LSM1O15116 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC19.87■□□□□ 0.77
LSM1O15116 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
LSM1O15116 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LSM1O15116 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LSM1O15116 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC19.87■□□□□ 0.77
LSM1O15116 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
LSM1O15116 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
LSM1O15116 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
LSM1O15116 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC19.87■□□□□ 0.77
LSM1O15116 KRT87P-202ENST00000534226 1464 ntBASIC19.86■□□□□ 0.77
LSM1O15116 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LSM1O15116 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
LSM1O15116 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC19.86■□□□□ 0.77
LSM1O15116 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC19.86■□□□□ 0.77
LSM1O15116 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC19.86■□□□□ 0.77
LSM1O15116 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.86■□□□□ 0.77
LSM1O15116 AC079140.4-201ENST00000507448 529 ntBASIC19.86■□□□□ 0.77
LSM1O15116 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC19.86■□□□□ 0.77
LSM1O15116 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC19.86■□□□□ 0.77
LSM1O15116 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC19.86■□□□□ 0.77
LSM1O15116 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LSM1O15116 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
LSM1O15116 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC19.86■□□□□ 0.77
LSM1O15116 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LSM1O15116 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC19.86■□□□□ 0.77
LSM1O15116 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
LSM1O15116 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LSM1O15116 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC19.85■□□□□ 0.77
LSM1O15116 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
LSM1O15116 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
LSM1O15116 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
LSM1O15116 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LSM1O15116 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
LSM1O15116 POU5F1P4-201ENST00000413175 1085 ntBASIC19.85■□□□□ 0.77
LSM1O15116 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
LSM1O15116 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC19.85■□□□□ 0.77
LSM1O15116 AC142381.2-201ENST00000566120 298 ntBASIC19.85■□□□□ 0.77
LSM1O15116 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC19.85■□□□□ 0.77
LSM1O15116 AC008175.2-201ENST00000612840 297 ntBASIC19.85■□□□□ 0.77
LSM1O15116 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
LSM1O15116 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
LSM1O15116 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LSM1O15116 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LSM1O15116 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LSM1O15116 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LSM1O15116 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC19.85■□□□□ 0.77
LSM1O15116 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LSM1O15116 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
LSM1O15116 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC19.85■□□□□ 0.77
LSM1O15116 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC19.84■□□□□ 0.77
LSM1O15116 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC19.84■□□□□ 0.77
LSM1O15116 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
LSM1O15116 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
LSM1O15116 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
LSM1O15116 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC19.84■□□□□ 0.77
LSM1O15116 DET1-207ENST00000564406 2315 ntTSL 2 BASIC19.84■□□□□ 0.77
LSM1O15116 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LSM1O15116 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LSM1O15116 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
LSM1O15116 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
LSM1O15116 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LSM1O15116 NME4-202ENST00000382940 766 ntTSL 3 BASIC19.84■□□□□ 0.77
LSM1O15116 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
LSM1O15116 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC19.84■□□□□ 0.77
LSM1O15116 NME4-211ENST00000620944 1193 ntTSL 2 BASIC19.84■□□□□ 0.77
LSM1O15116 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC19.84■□□□□ 0.77
LSM1O15116 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC19.84■□□□□ 0.77
LSM1O15116 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
LSM1O15116 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
LSM1O15116 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
LSM1O15116 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LSM1O15116 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
LSM1O15116 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
LSM1O15116 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC19.84■□□□□ 0.77
LSM1O15116 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
LSM1O15116 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LSM1O15116 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
LSM1O15116 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
LSM1O15116 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
LSM1O15116 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC19.83■□□□□ 0.77
LSM1O15116 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC19.83■□□□□ 0.77
LSM1O15116 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
LSM1O15116 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC19.83■□□□□ 0.77
LSM1O15116 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
LSM1O15116 STOX2-205ENST00000513034 807 ntTSL 3 BASIC19.83■□□□□ 0.77
LSM1O15116 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.77
LSM1O15116 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC19.83■□□□□ 0.77
LSM1O15116 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms