Protein–RNA interactions for Protein: O43679

LDB2, LIM domain-binding protein 2, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB2O43679 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC20.87■□□□□ 0.93
LDB2O43679 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LDB2O43679 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
LDB2O43679 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC20.86■□□□□ 0.93
LDB2O43679 AC120498.10-201ENST00000621827 505 ntBASIC20.86■□□□□ 0.93
LDB2O43679 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LDB2O43679 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC20.86■□□□□ 0.93
LDB2O43679 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
LDB2O43679 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
LDB2O43679 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
LDB2O43679 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC20.85■□□□□ 0.93
LDB2O43679 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LDB2O43679 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LDB2O43679 PLK5-205ENST00000642079 1969 ntBASIC20.85■□□□□ 0.93
LDB2O43679 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LDB2O43679 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
LDB2O43679 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
LDB2O43679 PARL-206ENST00000435888 1098 ntTSL 5 BASIC20.85■□□□□ 0.93
LDB2O43679 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC20.85■□□□□ 0.93
LDB2O43679 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC20.85■□□□□ 0.93
LDB2O43679 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
LDB2O43679 EXOC3-AS1-202ENST00000623673 1663 ntBASIC20.85■□□□□ 0.93
LDB2O43679 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
LDB2O43679 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
LDB2O43679 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
LDB2O43679 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LDB2O43679 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC20.85■□□□□ 0.93
LDB2O43679 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LDB2O43679 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
LDB2O43679 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LDB2O43679 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC20.84■□□□□ 0.93
LDB2O43679 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LDB2O43679 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
LDB2O43679 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
LDB2O43679 KRT18P5-201ENST00000436075 1291 ntBASIC20.84■□□□□ 0.93
LDB2O43679 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC20.84■□□□□ 0.93
LDB2O43679 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC20.84■□□□□ 0.93
LDB2O43679 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
LDB2O43679 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
LDB2O43679 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
LDB2O43679 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LDB2O43679 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
LDB2O43679 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
LDB2O43679 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
LDB2O43679 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC20.84■□□□□ 0.93
LDB2O43679 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC20.83■□□□□ 0.93
LDB2O43679 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC20.83■□□□□ 0.93
LDB2O43679 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
LDB2O43679 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LDB2O43679 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
LDB2O43679 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
LDB2O43679 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
LDB2O43679 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LDB2O43679 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC20.83■□□□□ 0.93
LDB2O43679 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
LDB2O43679 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC20.83■□□□□ 0.93
LDB2O43679 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
LDB2O43679 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
LDB2O43679 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC20.83■□□□□ 0.92
LDB2O43679 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
LDB2O43679 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
LDB2O43679 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.92
LDB2O43679 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.83■□□□□ 0.92
LDB2O43679 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC20.83■□□□□ 0.92
LDB2O43679 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
LDB2O43679 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
LDB2O43679 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LDB2O43679 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LDB2O43679 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC20.82■□□□□ 0.92
LDB2O43679 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LDB2O43679 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC20.82■□□□□ 0.92
LDB2O43679 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
LDB2O43679 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC20.82■□□□□ 0.92
LDB2O43679 AL162430.1-201ENST00000480705 870 ntBASIC20.82■□□□□ 0.92
LDB2O43679 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC20.82■□□□□ 0.92
LDB2O43679 SLC7A5P1-201ENST00000568957 537 ntBASIC20.82■□□□□ 0.92
LDB2O43679 TFG-210ENST00000620299 1289 ntTSL 5 BASIC20.82■□□□□ 0.92
LDB2O43679 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
LDB2O43679 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC20.81■□□□□ 0.92
LDB2O43679 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
LDB2O43679 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC20.81■□□□□ 0.92
LDB2O43679 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC20.81■□□□□ 0.92
LDB2O43679 AC121338.2-201ENST00000622535 1744 ntBASIC20.81■□□□□ 0.92
LDB2O43679 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LDB2O43679 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LDB2O43679 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
LDB2O43679 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
LDB2O43679 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC20.81■□□□□ 0.92
LDB2O43679 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC20.81■□□□□ 0.92
LDB2O43679 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
LDB2O43679 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC20.81■□□□□ 0.92
LDB2O43679 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC20.81■□□□□ 0.92
LDB2O43679 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC20.81■□□□□ 0.92
LDB2O43679 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC20.81■□□□□ 0.92
LDB2O43679 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC20.81■□□□□ 0.92
LDB2O43679 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC20.81■□□□□ 0.92
LDB2O43679 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC20.81■□□□□ 0.92
LDB2O43679 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC20.81■□□□□ 0.92
LDB2O43679 UBE2DNL-204ENST00000602536 740 ntBASIC20.81■□□□□ 0.92
LDB2O43679 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 127.2 ms