Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC28.14■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC28.13■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC28.13■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 AC006970.2-201ENST00000450065 779 ntBASIC28.13■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC28.13■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC28.13■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC28.12■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC28.12■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 FAM201B-201ENST00000458407 597 ntBASIC28.12■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 TUB-203ENST00000534099 1759 ntTSL 2 BASIC28.11■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC28.11■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC28.11■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC28.11■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC28.11■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC28.11■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC28.11■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 TPRG1LP1-201ENST00000598702 760 ntBASIC28.11■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC28.11■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC28.11■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC28.11■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC28.11■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC28.1■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 MFF-208ENST00000409616 1247 ntTSL 5 BASIC28.1■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC28.1■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC28.1■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC28.1■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC28.1■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 MPST-204ENST00000404393 1329 ntTSL 5 BASIC28.1■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 AL157384.1-201ENST00000445995 2473 ntBASIC28.1■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC28.1■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC28.1■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC28.1■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC28.1■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC28.1■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC28.09■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC28.09■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC28.09■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 AC123595.1-201ENST00000440769 1046 ntBASIC28.09■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC28.09■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC28.09■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC28.09■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC28.09■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC28.09■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC28.09■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC28.09■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC28.08■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC28.08■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC28.08■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC28.08■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC28.08■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
SENP3-EIF4A1A0A087X0R7 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 PKD1P6-201ENST00000343738 4769 ntBASIC28.07■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 MIR1224-201ENST00000408193 85 ntBASIC28.07■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC28.07■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC28.07■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC28.07■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC28.07■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
SENP3-EIF4A1A0A087X0R7 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
Retrieved 100 of 98,524 protein–RNA pairs in 60 ms