Protein–RNA interactions for Protein: P43588

RPN11, Ubiquitin carboxyl-terminal hydrolase RPN11, yeastyeast

Known RBP Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RPN11P43588 YGR296C-AYGR296C-A 576 nt11.67□□□□□ -0.54
RPN11P43588 YML133W-AYML133W-A 576 nt11.67□□□□□ -0.54
RPN11P43588 YNL339W-AYNL339W-A 576 nt11.67□□□□□ -0.54
RPN11P43588 YPL283W-AYPL283W-A 576 nt11.67□□□□□ -0.54
RPN11P43588 YJL118WYJL118W 660 nt11.66□□□□□ -0.54
RPN11P43588 SED1YDR077W 1017 nt11.63□□□□□ -0.55
RPN11P43588 LSB5YCL034W 1065 nt11.62□□□□□ -0.55
RPN11P43588 NIF3YGL221C 867 nt11.61□□□□□ -0.55
RPN11P43588 YPR126CYPR126C 309 nt11.6□□□□□ -0.55
RPN11P43588 SWM1YDR260C 513 nt11.59□□□□□ -0.55
RPN11P43588 IGD1YFR017C 588 nt11.59□□□□□ -0.55
RPN11P43588 RIB7YBR153W 735 nt11.59□□□□□ -0.55
RPN11P43588 RPL12BYDR418W 498 nt11.57□□□□□ -0.56
RPN11P43588 SAM3YPL274W 1764 nt11.56□□□□□ -0.56
RPN11P43588 CTI6YPL181W 1521 nt11.56□□□□□ -0.56
RPN11P43588 RPT5YOR117W 1305 nt11.56□□□□□ -0.56
RPN11P43588 HIF1YLL022C 1158 nt11.55□□□□□ -0.56
RPN11P43588 YOR343CYOR343C 327 nt11.55□□□□□ -0.56
RPN11P43588 YPL251WYPL251W 303 nt11.54□□□□□ -0.56
RPN11P43588 YCR025CYCR025C 411 nt11.53□□□□□ -0.56
RPN11P43588 YOR268CYOR268C 399 nt11.51□□□□□ -0.57
RPN11P43588 tA(AGC)DtA(AGC)D 73 nt11.5□□□□□ -0.57
RPN11P43588 tA(AGC)FtA(AGC)F 73 nt11.5□□□□□ -0.57
RPN11P43588 tA(AGC)GtA(AGC)G 73 nt11.5□□□□□ -0.57
RPN11P43588 tA(AGC)HtA(AGC)H 73 nt11.5□□□□□ -0.57
RPN11P43588 tA(AGC)JtA(AGC)J 73 nt11.5□□□□□ -0.57
RPN11P43588 tA(AGC)K1tA(AGC)K1 73 nt11.5□□□□□ -0.57
RPN11P43588 tA(AGC)K2tA(AGC)K2 73 nt11.5□□□□□ -0.57
RPN11P43588 tA(AGC)LtA(AGC)L 73 nt11.5□□□□□ -0.57
RPN11P43588 tA(AGC)M1tA(AGC)M1 73 nt11.5□□□□□ -0.57
RPN11P43588 tA(AGC)M2tA(AGC)M2 73 nt11.5□□□□□ -0.57
RPN11P43588 tA(AGC)PtA(AGC)P 73 nt11.5□□□□□ -0.57
RPN11P43588 LIP1YMR298W 453 nt11.5□□□□□ -0.57
RPN11P43588 IPL1YPL209C 1104 nt11.5□□□□□ -0.57
RPN11P43588 MFG1YDL233W 1377 nt11.5□□□□□ -0.57
RPN11P43588 TOS1YBR162C 1368 nt11.5□□□□□ -0.57
RPN11P43588 MEP3YPR138C 1470 nt11.5□□□□□ -0.57
RPN11P43588 PAU21YOR394W 495 nt11.49□□□□□ -0.57
RPN11P43588 PAU22YPL282C 495 nt11.49□□□□□ -0.57
RPN11P43588 LYS20YDL182W 1287 nt11.48□□□□□ -0.57
RPN11P43588 YAL016C-AYAL016C-A 315 nt11.48□□□□□ -0.57
RPN11P43588 YMR103CYMR103C 363 nt11.48□□□□□ -0.57
RPN11P43588 IML3YBR107C 738 nt11.48□□□□□ -0.57
RPN11P43588 ACO2YJL200C 2370 nt11.47□□□□□ -0.57
RPN11P43588 NUC1YJL208C 990 nt11.46□□□□□ -0.57
RPN11P43588 DAK2YFL053W 1776 nt11.46□□□□□ -0.58
RPN11P43588 IRC24YIR036C 792 nt11.43□□□□□ -0.58
RPN11P43588 SSN3YPL042C 1668 nt11.43□□□□□ -0.58
RPN11P43588 SAM35YHR083W 990 nt11.42□□□□□ -0.58
RPN11P43588 CDD1YLR245C 429 nt11.42□□□□□ -0.58
RPN11P43588 YMR007WYMR007W 381 nt11.42□□□□□ -0.58
RPN11P43588 BRR1YPR057W 1026 nt11.42□□□□□ -0.58
RPN11P43588 PHO23YNL097C 993 nt11.41□□□□□ -0.58
RPN11P43588 LEU9YOR108W 1815 nt11.39□□□□□ -0.59
RPN11P43588 BNI5YNL166C 1347 nt11.39□□□□□ -0.59
RPN11P43588 TPS1YBR126C 1488 nt11.39□□□□□ -0.59
RPN11P43588 YBL086CYBL086C 1401 nt11.37□□□□□ -0.59
RPN11P43588 HOG1YLR113W 1308 nt11.36□□□□□ -0.59
RPN11P43588 YGR259CYGR259C 441 nt11.35□□□□□ -0.59
RPN11P43588 HRA1HRA1 564 nt11.35□□□□□ -0.59
RPN11P43588 YNL024CYNL024C 741 nt11.35□□□□□ -0.59
RPN11P43588 RCR1YBR005W 642 nt11.35□□□□□ -0.59
RPN11P43588 MSC1YML128C 1542 nt11.35□□□□□ -0.59
RPN11P43588 DBP1YPL119C 1854 nt11.34□□□□□ -0.59
RPN11P43588 TOA2YKL058W 369 nt11.34□□□□□ -0.59
RPN11P43588 PRM5YIL117C 957 nt11.33□□□□□ -0.6
RPN11P43588 NAS2YIL007C 663 nt11.32□□□□□ -0.6
RPN11P43588 OYE3YPL171C 1203 nt11.32□□□□□ -0.6
RPN11P43588 FUR4YBR021W 1902 nt11.32□□□□□ -0.6
RPN11P43588 OYE2YHR179W 1203 nt11.3□□□□□ -0.6
RPN11P43588 FLX1YIL134W 936 nt11.3□□□□□ -0.6
RPN11P43588 YMR206WYMR206W 942 nt11.28□□□□□ -0.6
RPN11P43588 GND2YGR256W 1479 nt11.26□□□□□ -0.61
RPN11P43588 GRH1YDR517W 1119 nt11.25□□□□□ -0.61
RPN11P43588 HXT1YHR094C 1713 nt11.25□□□□□ -0.61
RPN11P43588 TRT2tT(CGU)K 72 nt11.24□□□□□ -0.61
RPN11P43588 EAF3YPR023C 1206 nt11.24□□□□□ -0.61
RPN11P43588 SER2YGR208W 930 nt11.23□□□□□ -0.61
RPN11P43588 RAS2YNL098C 969 nt11.23□□□□□ -0.61
RPN11P43588 EDC2YER035W 438 nt11.21□□□□□ -0.61
RPN11P43588 TMA23YMR269W 636 nt11.21□□□□□ -0.61
RPN11P43588 SEC61YLR378C 1443 nt11.19□□□□□ -0.62
RPN11P43588 FUB1YCR076C 753 nt11.19□□□□□ -0.62
RPN11P43588 PCP1YGR101W 1041 nt11.19□□□□□ -0.62
RPN11P43588 SPS100YHR139C 981 nt11.19□□□□□ -0.62
RPN11P43588 YKR005CYKR005C 1578 nt11.19□□□□□ -0.62
RPN11P43588 OXA1YER154W 1209 nt11.18□□□□□ -0.62
RPN11P43588 THP3YPR045C 1413 nt11.16□□□□□ -0.62
RPN11P43588 UFO1YML088W 2007 nt11.14□□□□□ -0.63
RPN11P43588 HTS1YPR033C 1641 nt11.14□□□□□ -0.63
RPN11P43588 YER188WYER188W 720 nt11.14□□□□□ -0.63
RPN11P43588 PHB2YGR231C 933 nt11.14□□□□□ -0.63
RPN11P43588 ADH3YMR083W 1128 nt11.13□□□□□ -0.63
RPN11P43588 DDI1YER143W 1287 nt11.12□□□□□ -0.63
RPN11P43588 IMO32YGR031W 1029 nt11.12□□□□□ -0.63
RPN11P43588 RSC8YFR037C 1674 nt11.11□□□□□ -0.63
RPN11P43588 SAM2YDR502C 1155 nt11.11□□□□□ -0.63
RPN11P43588 YFR036W-AYFR036W-A 651 nt11.1□□□□□ -0.63
RPN11P43588 KAE1YKR038C 1161 nt11.1□□□□□ -0.63
RPN11P43588 CYC3YAL039C 810 nt11.09□□□□□ -0.63
Retrieved 100 of 7,029 protein–RNA pairs in 16.9 ms