Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
MMP28Q9H239 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC18.55■□□□□ 0.56
MMP28Q9H239 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
MMP28Q9H239 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC18.55■□□□□ 0.56
MMP28Q9H239 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
MMP28Q9H239 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
MMP28Q9H239 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
MMP28Q9H239 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
MMP28Q9H239 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC18.55■□□□□ 0.56
MMP28Q9H239 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
MMP28Q9H239 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
MMP28Q9H239 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC18.55■□□□□ 0.56
MMP28Q9H239 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
MMP28Q9H239 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC18.55■□□□□ 0.56
MMP28Q9H239 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
MMP28Q9H239 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
MMP28Q9H239 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
MMP28Q9H239 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
MMP28Q9H239 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
MMP28Q9H239 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC18.55■□□□□ 0.56
MMP28Q9H239 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
MMP28Q9H239 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
MMP28Q9H239 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
MMP28Q9H239 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC18.54■□□□□ 0.56
MMP28Q9H239 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
MMP28Q9H239 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC18.54■□□□□ 0.56
MMP28Q9H239 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
MMP28Q9H239 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC18.54■□□□□ 0.56
MMP28Q9H239 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
MMP28Q9H239 TSPY9P-201ENST00000440215 945 ntBASIC18.54■□□□□ 0.56
MMP28Q9H239 TSPY11P-201ENST00000442607 1045 ntBASIC18.54■□□□□ 0.56
MMP28Q9H239 CREM-229ENST00000474362 1030 ntTSL 2 BASIC18.54■□□□□ 0.56
MMP28Q9H239 GRAMD4P7-201ENST00000578182 1232 ntBASIC18.54■□□□□ 0.56
MMP28Q9H239 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC18.54■□□□□ 0.56
MMP28Q9H239 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
MMP28Q9H239 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
MMP28Q9H239 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
MMP28Q9H239 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC18.54■□□□□ 0.56
MMP28Q9H239 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC18.54■□□□□ 0.56
MMP28Q9H239 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
MMP28Q9H239 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
MMP28Q9H239 EML3-217ENST00000531557 2509 ntTSL 5 BASIC18.54■□□□□ 0.56
MMP28Q9H239 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC18.54■□□□□ 0.56
MMP28Q9H239 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
MMP28Q9H239 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
MMP28Q9H239 ME2-218ENST00000640965 2476 ntTSL 5 BASIC18.54■□□□□ 0.56
MMP28Q9H239 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
MMP28Q9H239 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
MMP28Q9H239 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
MMP28Q9H239 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
MMP28Q9H239 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
MMP28Q9H239 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
MMP28Q9H239 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
MMP28Q9H239 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
MMP28Q9H239 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
MMP28Q9H239 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC18.53■□□□□ 0.56
MMP28Q9H239 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
MMP28Q9H239 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC18.53■□□□□ 0.56
MMP28Q9H239 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
MMP28Q9H239 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
MMP28Q9H239 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
MMP28Q9H239 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
MMP28Q9H239 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
MMP28Q9H239 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC18.53■□□□□ 0.56
MMP28Q9H239 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
MMP28Q9H239 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
MMP28Q9H239 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
MMP28Q9H239 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
MMP28Q9H239 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC18.52■□□□□ 0.56
MMP28Q9H239 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC18.52■□□□□ 0.56
MMP28Q9H239 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC18.52■□□□□ 0.56
MMP28Q9H239 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
MMP28Q9H239 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
MMP28Q9H239 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
MMP28Q9H239 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC18.52■□□□□ 0.56
MMP28Q9H239 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC18.52■□□□□ 0.56
MMP28Q9H239 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
MMP28Q9H239 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
MMP28Q9H239 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
MMP28Q9H239 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
MMP28Q9H239 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
MMP28Q9H239 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
MMP28Q9H239 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
MMP28Q9H239 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
MMP28Q9H239 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
MMP28Q9H239 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC18.51■□□□□ 0.55
MMP28Q9H239 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
MMP28Q9H239 AC010997.5-201ENST00000609182 354 ntBASIC18.51■□□□□ 0.55
MMP28Q9H239 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
MMP28Q9H239 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
MMP28Q9H239 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
MMP28Q9H239 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
MMP28Q9H239 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
MMP28Q9H239 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
MMP28Q9H239 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC18.51■□□□□ 0.55
MMP28Q9H239 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
MMP28Q9H239 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC18.5■□□□□ 0.55
MMP28Q9H239 AC005703.6-201ENST00000623265 1329 ntBASIC18.5■□□□□ 0.55
MMP28Q9H239 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC18.5■□□□□ 0.55
MMP28Q9H239 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms