Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC18.28■□□□□ 0.52
ABCA4P78363 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ABCA4P78363 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ABCA4P78363 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ABCA4P78363 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC18.28■□□□□ 0.52
ABCA4P78363 INO80E-214ENST00000620599 515 ntTSL 2 BASIC18.28■□□□□ 0.52
ABCA4P78363 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC18.27■□□□□ 0.52
ABCA4P78363 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
ABCA4P78363 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC18.27■□□□□ 0.52
ABCA4P78363 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC18.27■□□□□ 0.52
ABCA4P78363 AC087742.1-201ENST00000575880 1738 ntBASIC18.27■□□□□ 0.52
ABCA4P78363 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
ABCA4P78363 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
ABCA4P78363 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
ABCA4P78363 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
ABCA4P78363 AC142381.4-202ENST00000563973 229 ntBASIC18.27■□□□□ 0.52
ABCA4P78363 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC18.27■□□□□ 0.52
ABCA4P78363 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
ABCA4P78363 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC18.27■□□□□ 0.51
ABCA4P78363 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
ABCA4P78363 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
ABCA4P78363 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
ABCA4P78363 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC18.26■□□□□ 0.51
ABCA4P78363 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC18.26■□□□□ 0.51
ABCA4P78363 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC18.26■□□□□ 0.51
ABCA4P78363 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
ABCA4P78363 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
ABCA4P78363 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
ABCA4P78363 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC18.26■□□□□ 0.51
ABCA4P78363 C9orf163-202ENST00000624034 2573 ntBASIC18.26■□□□□ 0.51
ABCA4P78363 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC18.26■□□□□ 0.51
ABCA4P78363 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
ABCA4P78363 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
ABCA4P78363 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
ABCA4P78363 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
ABCA4P78363 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
ABCA4P78363 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC18.26■□□□□ 0.51
ABCA4P78363 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC18.26■□□□□ 0.51
ABCA4P78363 OR10C1-204ENST00000622521 1039 ntBASIC18.26■□□□□ 0.51
ABCA4P78363 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC18.26■□□□□ 0.51
ABCA4P78363 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
ABCA4P78363 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
ABCA4P78363 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC18.26■□□□□ 0.51
ABCA4P78363 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
ABCA4P78363 UNC93B5-201ENST00000530315 699 ntBASIC18.25■□□□□ 0.51
ABCA4P78363 IRX5-204ENST00000560154 879 ntTSL 5 BASIC18.25■□□□□ 0.51
ABCA4P78363 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
ABCA4P78363 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC18.25■□□□□ 0.51
ABCA4P78363 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
ABCA4P78363 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
ABCA4P78363 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
ABCA4P78363 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
ABCA4P78363 DUSP5P2-201ENST00000426873 1033 ntBASIC18.25■□□□□ 0.51
ABCA4P78363 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC18.25■□□□□ 0.51
ABCA4P78363 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
ABCA4P78363 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
ABCA4P78363 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
ABCA4P78363 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
ABCA4P78363 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
ABCA4P78363 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
ABCA4P78363 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
ABCA4P78363 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
ABCA4P78363 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
ABCA4P78363 ESRRAP1-201ENST00000400596 1257 ntBASIC18.24■□□□□ 0.51
ABCA4P78363 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC18.24■□□□□ 0.51
ABCA4P78363 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC18.24■□□□□ 0.51
ABCA4P78363 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
ABCA4P78363 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
ABCA4P78363 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
ABCA4P78363 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
ABCA4P78363 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
ABCA4P78363 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
ABCA4P78363 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
ABCA4P78363 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC18.24■□□□□ 0.51
ABCA4P78363 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC18.24■□□□□ 0.51
ABCA4P78363 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC18.24■□□□□ 0.51
ABCA4P78363 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
ABCA4P78363 BX276092.2-201ENST00000417668 665 ntBASIC18.24■□□□□ 0.51
ABCA4P78363 AC091874.3-201ENST00000512672 1195 ntBASIC18.24■□□□□ 0.51
ABCA4P78363 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC18.24■□□□□ 0.51
ABCA4P78363 AP006294.2-201ENST00000641667 209 ntBASIC18.24■□□□□ 0.51
ABCA4P78363 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
ABCA4P78363 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
ABCA4P78363 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
ABCA4P78363 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC18.23■□□□□ 0.51
ABCA4P78363 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
ABCA4P78363 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
ABCA4P78363 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC18.23■□□□□ 0.51
ABCA4P78363 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
ABCA4P78363 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC18.23■□□□□ 0.51
ABCA4P78363 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
ABCA4P78363 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
ABCA4P78363 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC18.23■□□□□ 0.51
ABCA4P78363 RARG-204ENST00000543726 1779 ntTSL 2 BASIC18.23■□□□□ 0.51
ABCA4P78363 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
ABCA4P78363 RBM17P2-201ENST00000616397 1405 ntBASIC18.23■□□□□ 0.51
ABCA4P78363 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC18.23■□□□□ 0.51
ABCA4P78363 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
ABCA4P78363 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
ABCA4P78363 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms