Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC18.34■□□□□ 0.53
ABCA4P78363 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ABCA4P78363 MIR4758-201ENST00000577688 71 ntBASIC18.34■□□□□ 0.53
ABCA4P78363 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
ABCA4P78363 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
ABCA4P78363 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC18.34■□□□□ 0.53
ABCA4P78363 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC18.34■□□□□ 0.53
ABCA4P78363 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
ABCA4P78363 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
ABCA4P78363 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC18.33■□□□□ 0.53
ABCA4P78363 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
ABCA4P78363 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC18.33■□□□□ 0.53
ABCA4P78363 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC18.33■□□□□ 0.53
ABCA4P78363 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC18.33■□□□□ 0.53
ABCA4P78363 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
ABCA4P78363 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC18.33■□□□□ 0.52
ABCA4P78363 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
ABCA4P78363 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
ABCA4P78363 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC18.33■□□□□ 0.52
ABCA4P78363 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC18.33■□□□□ 0.52
ABCA4P78363 GCSHP5-201ENST00000443090 522 ntBASIC18.33■□□□□ 0.52
ABCA4P78363 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC18.33■□□□□ 0.52
ABCA4P78363 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC18.33■□□□□ 0.52
ABCA4P78363 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
ABCA4P78363 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ABCA4P78363 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
ABCA4P78363 AP006587.3-201ENST00000525742 1516 ntBASIC18.32■□□□□ 0.52
ABCA4P78363 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
ABCA4P78363 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ABCA4P78363 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC18.32■□□□□ 0.52
ABCA4P78363 CYP2T1P-201ENST00000432607 1285 ntBASIC18.32■□□□□ 0.52
ABCA4P78363 RPS2P52-201ENST00000469610 820 ntBASIC18.32■□□□□ 0.52
ABCA4P78363 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
ABCA4P78363 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC18.32■□□□□ 0.52
ABCA4P78363 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC18.32■□□□□ 0.52
ABCA4P78363 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC18.32■□□□□ 0.52
ABCA4P78363 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
ABCA4P78363 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ABCA4P78363 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC18.32■□□□□ 0.52
ABCA4P78363 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
ABCA4P78363 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ABCA4P78363 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC18.32■□□□□ 0.52
ABCA4P78363 MYC-209ENST00000641252 345 ntBASIC18.32■□□□□ 0.52
ABCA4P78363 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
ABCA4P78363 AC137767.1-201ENST00000602918 1920 ntBASIC18.31■□□□□ 0.52
ABCA4P78363 RHEB-204ENST00000472642 900 ntTSL 3 BASIC18.31■□□□□ 0.52
ABCA4P78363 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
ABCA4P78363 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
ABCA4P78363 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
ABCA4P78363 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC18.3■□□□□ 0.52
ABCA4P78363 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
ABCA4P78363 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC18.3■□□□□ 0.52
ABCA4P78363 TERF1P5-201ENST00000477545 1207 ntBASIC18.3■□□□□ 0.52
ABCA4P78363 AC079089.2-201ENST00000531211 1277 ntBASIC18.3■□□□□ 0.52
ABCA4P78363 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
ABCA4P78363 AL162412.1-201ENST00000567129 965 ntBASIC18.3■□□□□ 0.52
ABCA4P78363 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
ABCA4P78363 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
ABCA4P78363 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
ABCA4P78363 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
ABCA4P78363 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC18.3■□□□□ 0.52
ABCA4P78363 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
ABCA4P78363 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
ABCA4P78363 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC18.3■□□□□ 0.52
ABCA4P78363 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
ABCA4P78363 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
ABCA4P78363 NAA20-201ENST00000310450 920 ntTSL 2 BASIC18.3■□□□□ 0.52
ABCA4P78363 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
ABCA4P78363 AL512625.2-201ENST00000417533 625 ntBASIC18.3■□□□□ 0.52
ABCA4P78363 PHB2-213ENST00000546111 858 ntTSL 2 BASIC18.3■□□□□ 0.52
ABCA4P78363 AIRN-201ENST00000601203 4374 ntBASIC18.29■□□□□ 0.52
ABCA4P78363 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
ABCA4P78363 BMP1-204ENST00000397814 836 ntTSL 4 BASIC18.29■□□□□ 0.52
ABCA4P78363 POU5F1P4-201ENST00000413175 1085 ntBASIC18.29■□□□□ 0.52
ABCA4P78363 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC18.29■□□□□ 0.52
ABCA4P78363 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
ABCA4P78363 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC18.29■□□□□ 0.52
ABCA4P78363 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
ABCA4P78363 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
ABCA4P78363 ISCU-212ENST00000547005 795 ntTSL 3 BASIC18.29■□□□□ 0.52
ABCA4P78363 AC008694.1-202ENST00000636953 945 ntBASIC18.29■□□□□ 0.52
ABCA4P78363 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
ABCA4P78363 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
ABCA4P78363 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
ABCA4P78363 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC18.29■□□□□ 0.52
ABCA4P78363 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
ABCA4P78363 AC098590.1-201ENST00000468126 897 ntBASIC18.29■□□□□ 0.52
ABCA4P78363 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC18.29■□□□□ 0.52
ABCA4P78363 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC18.29■□□□□ 0.52
ABCA4P78363 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC18.29■□□□□ 0.52
ABCA4P78363 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
ABCA4P78363 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
ABCA4P78363 KRT16P2-201ENST00000414673 1423 ntBASIC18.28■□□□□ 0.52
ABCA4P78363 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
ABCA4P78363 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
ABCA4P78363 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC18.28■□□□□ 0.52
ABCA4P78363 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC18.28■□□□□ 0.52
ABCA4P78363 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC18.28■□□□□ 0.52
ABCA4P78363 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ABCA4P78363 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 143.8 ms