Protein–RNA interactions for Protein: P25336

MSH3, DNA mismatch repair protein MSH3, yeastyeast

Predictions only

Length 1,018 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
MSH3P25336 PAU7YAR020C 168 nt10.98□□□□□ -0.65
MSH3P25336 NDI1YML120C 1542 nt10.98□□□□□ -0.65
MSH3P25336 MET2YNL277W 1461 nt10.95□□□□□ -0.66
MSH3P25336 MIR1YJR077C 936 nt10.95□□□□□ -0.66
MSH3P25336 SHB17YKR043C 816 nt10.95□□□□□ -0.66
MSH3P25336 NPP1YCR026C 2229 nt10.92□□□□□ -0.66
MSH3P25336 PAU16YKL224C 372 nt10.92□□□□□ -0.66
MSH3P25336 POM34YLR018C 900 nt10.92□□□□□ -0.66
MSH3P25336 GAP1YKR039W 1809 nt10.91□□□□□ -0.66
MSH3P25336 UTR1YJR049C 1593 nt10.9□□□□□ -0.66
MSH3P25336 SFA1YDL168W 1161 nt10.9□□□□□ -0.66
MSH3P25336 PRO1YDR300C 1287 nt10.9□□□□□ -0.66
MSH3P25336 PRM5YIL117C 957 nt10.9□□□□□ -0.66
MSH3P25336 RIM8YGL045W 1629 nt10.88□□□□□ -0.67
MSH3P25336 MAE1YKL029C 2010 nt10.88□□□□□ -0.67
MSH3P25336 RET2YFR051C 1641 nt10.87□□□□□ -0.67
MSH3P25336 HIF1YLL022C 1158 nt10.87□□□□□ -0.67
MSH3P25336 ALD4YOR374W 1560 nt10.85□□□□□ -0.67
MSH3P25336 UBA4YHR111W 1323 nt10.84□□□□□ -0.67
MSH3P25336 YHL019W-AYHL019W-A 594 nt10.83□□□□□ -0.68
MSH3P25336 YML089CYML089C 369 nt10.83□□□□□ -0.68
MSH3P25336 HMG2YLR450W 3138 nt10.82□□□□□ -0.68
MSH3P25336 SPT20YOL148C 1815 nt10.81□□□□□ -0.68
MSH3P25336 THI74YDR438W 1113 nt10.81□□□□□ -0.68
MSH3P25336 ATG15YCR068W 1563 nt10.81□□□□□ -0.68
MSH3P25336 TOM6YOR045W 186 nt10.8□□□□□ -0.68
MSH3P25336 YGL114WYGL114W 2178 nt10.79□□□□□ -0.68
MSH3P25336 PHO89YBR296C 1725 nt10.78□□□□□ -0.68
MSH3P25336 TPO4YOR273C 1980 nt10.76□□□□□ -0.69
MSH3P25336 YFL015W-AYFL015W-A 318 nt10.75□□□□□ -0.69
MSH3P25336 DIF1YLR437C 402 nt10.75□□□□□ -0.69
MSH3P25336 SAM35YHR083W 990 nt10.74□□□□□ -0.69
MSH3P25336 YSR3YKR053C 1215 nt10.74□□□□□ -0.69
MSH3P25336 CSM2YIL132C 642 nt10.73□□□□□ -0.69
MSH3P25336 COQ2YNR041C 1119 nt10.73□□□□□ -0.69
MSH3P25336 NAT4YMR069W 858 nt10.72□□□□□ -0.69
MSH3P25336 TIF6YPR016C 738 nt10.72□□□□□ -0.69
MSH3P25336 MSF1YPR047W 1410 nt10.72□□□□□ -0.69
MSH3P25336 HIP1YGR191W 1812 nt10.71□□□□□ -0.69
MSH3P25336 PEX2YJL210W 816 nt10.7□□□□□ -0.7
MSH3P25336 XYL2YLR070C 1071 nt10.67□□□□□ -0.7
MSH3P25336 DBP1YPL119C 1854 nt10.67□□□□□ -0.7
MSH3P25336 UGA4YDL210W 1716 nt10.67□□□□□ -0.7
MSH3P25336 RPC82YPR190C 1965 nt10.66□□□□□ -0.7
MSH3P25336 YCR087WYCR087W 516 nt10.66□□□□□ -0.7
MSH3P25336 GID7YCL039W 2238 nt10.65□□□□□ -0.7
MSH3P25336 MRP20YDR405W 792 nt10.65□□□□□ -0.7
MSH3P25336 YGL034CYGL034C 366 nt10.65□□□□□ -0.7
MSH3P25336 ACO2YJL200C 2370 nt10.65□□□□□ -0.71
MSH3P25336 ZRT3YKL175W 1512 nt10.63□□□□□ -0.71
MSH3P25336 MET28YIR017C 564 nt10.61□□□□□ -0.71
MSH3P25336 MUP1YGR055W 1725 nt10.61□□□□□ -0.71
MSH3P25336 YAR028WYAR028W 705 nt10.59□□□□□ -0.71
MSH3P25336 AIM45YPR004C 1035 nt10.59□□□□□ -0.71
MSH3P25336 HXT1YHR094C 1713 nt10.58□□□□□ -0.72
MSH3P25336 RPL4BYDR012W 1089 nt10.57□□□□□ -0.72
MSH3P25336 RPL4AYBR031W 1089 nt10.57□□□□□ -0.72
MSH3P25336 UTH1YKR042W 1098 nt10.56□□□□□ -0.72
MSH3P25336 NRT1YOR071C 1797 nt10.56□□□□□ -0.72
MSH3P25336 MTG2YHR168W 1557 nt10.56□□□□□ -0.72
MSH3P25336 INA1YLR413W 2028 nt10.55□□□□□ -0.72
MSH3P25336 SSN3YPL042C 1668 nt10.55□□□□□ -0.72
MSH3P25336 CLB6YGR109C 1143 nt10.55□□□□□ -0.72
MSH3P25336 RPS14BYJL191W 417 nt10.54□□□□□ -0.72
MSH3P25336 URA8YJR103W 1737 nt10.54□□□□□ -0.72
MSH3P25336 YER190C-AYER190C-A 576 nt10.53□□□□□ -0.72
MSH3P25336 YGR296C-AYGR296C-A 576 nt10.53□□□□□ -0.72
MSH3P25336 YML133W-AYML133W-A 576 nt10.53□□□□□ -0.72
MSH3P25336 YNL339W-AYNL339W-A 576 nt10.53□□□□□ -0.72
MSH3P25336 YPL283W-AYPL283W-A 576 nt10.53□□□□□ -0.72
MSH3P25336 YBL086CYBL086C 1401 nt10.52□□□□□ -0.73
MSH3P25336 SHY1YGR112W 1170 nt10.52□□□□□ -0.73
MSH3P25336 YJL067WYJL067W 351 nt10.52□□□□□ -0.73
MSH3P25336 SED1YDR077W 1017 nt10.5□□□□□ -0.73
MSH3P25336 LIP1YMR298W 453 nt10.5□□□□□ -0.73
MSH3P25336 FIT3YOR383C 615 nt10.49□□□□□ -0.73
MSH3P25336 ZTA1YBR046C 1005 nt10.48□□□□□ -0.73
MSH3P25336 ALP1YNL270C 1722 nt10.47□□□□□ -0.73
MSH3P25336 RBG1YAL036C 1110 nt10.46□□□□□ -0.73
MSH3P25336 LEU9YOR108W 1815 nt10.45□□□□□ -0.74
MSH3P25336 MET8YBR213W 825 nt10.45□□□□□ -0.74
MSH3P25336 AKR2YOR034C 2250 nt10.44□□□□□ -0.74
MSH3P25336 UFO1YML088W 2007 nt10.42□□□□□ -0.74
MSH3P25336 URA6YKL024C 615 nt10.41□□□□□ -0.74
MSH3P25336 HOL1YNR055C 1761 nt10.4□□□□□ -0.74
MSH3P25336 YPL251WYPL251W 303 nt10.4□□□□□ -0.74
MSH3P25336 GTB1YDR221W 2109 nt10.4□□□□□ -0.74
MSH3P25336 SAM1YLR180W 1149 nt10.37□□□□□ -0.75
MSH3P25336 BRR1YPR057W 1026 nt10.37□□□□□ -0.75
MSH3P25336 SBA1YKL117W 651 nt10.36□□□□□ -0.75
MSH3P25336 PAU21YOR394W 495 nt10.36□□□□□ -0.75
MSH3P25336 PAU22YPL282C 495 nt10.36□□□□□ -0.75
MSH3P25336 TSC10YBR265W 963 nt10.36□□□□□ -0.75
MSH3P25336 FRE6YLL051C 2139 nt10.36□□□□□ -0.75
MSH3P25336 YLR279WYLR279W 390 nt10.34□□□□□ -0.75
MSH3P25336 TOA2YKL058W 369 nt10.33□□□□□ -0.76
MSH3P25336 ESBP6YNL125C 2022 nt10.31□□□□□ -0.76
MSH3P25336 OYE3YPL171C 1203 nt10.3□□□□□ -0.76
MSH3P25336 GND2YGR256W 1479 nt10.3□□□□□ -0.76
MSH3P25336 TRT2tT(CGU)K 72 nt10.29□□□□□ -0.76
Retrieved 100 of 7,029 protein–RNA pairs in 15.3 ms