Protein–RNA interactions for Protein: Q9Y5I7

CLDN16, Claudin-16, humanhuman

Predictions only

Length 305 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN16Q9Y5I7 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
CLDN16Q9Y5I7 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC20.27■□□□□ 0.84
CLDN16Q9Y5I7 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CLDN16Q9Y5I7 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC20.27■□□□□ 0.84
CLDN16Q9Y5I7 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CLDN16Q9Y5I7 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CLDN16Q9Y5I7 AK1-201ENST00000223836 736 ntTSL 3 BASIC20.27■□□□□ 0.84
CLDN16Q9Y5I7 NME4-202ENST00000382940 766 ntTSL 3 BASIC20.27■□□□□ 0.84
CLDN16Q9Y5I7 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CLDN16Q9Y5I7 MFF-208ENST00000409616 1247 ntTSL 5 BASIC20.27■□□□□ 0.84
CLDN16Q9Y5I7 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC20.27■□□□□ 0.84
CLDN16Q9Y5I7 NME4-211ENST00000620944 1193 ntTSL 2 BASIC20.27■□□□□ 0.84
CLDN16Q9Y5I7 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CLDN16Q9Y5I7 MPST-204ENST00000404393 1329 ntTSL 5 BASIC20.27■□□□□ 0.83
CLDN16Q9Y5I7 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CLDN16Q9Y5I7 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CLDN16Q9Y5I7 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CLDN16Q9Y5I7 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CLDN16Q9Y5I7 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
CLDN16Q9Y5I7 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CLDN16Q9Y5I7 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
CLDN16Q9Y5I7 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CLDN16Q9Y5I7 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
CLDN16Q9Y5I7 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC20.26■□□□□ 0.83
CLDN16Q9Y5I7 TPRG1LP1-201ENST00000598702 760 ntBASIC20.26■□□□□ 0.83
CLDN16Q9Y5I7 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CLDN16Q9Y5I7 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CLDN16Q9Y5I7 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CLDN16Q9Y5I7 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
CLDN16Q9Y5I7 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CLDN16Q9Y5I7 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CLDN16Q9Y5I7 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CLDN16Q9Y5I7 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC20.26■□□□□ 0.83
CLDN16Q9Y5I7 ASL-203ENST00000380839 1765 ntTSL 5 BASIC20.26■□□□□ 0.83
CLDN16Q9Y5I7 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CLDN16Q9Y5I7 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CLDN16Q9Y5I7 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CLDN16Q9Y5I7 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC20.25■□□□□ 0.83
CLDN16Q9Y5I7 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CLDN16Q9Y5I7 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CLDN16Q9Y5I7 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CLDN16Q9Y5I7 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC20.25■□□□□ 0.83
CLDN16Q9Y5I7 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC20.25■□□□□ 0.83
CLDN16Q9Y5I7 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC20.25■□□□□ 0.83
CLDN16Q9Y5I7 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CLDN16Q9Y5I7 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CLDN16Q9Y5I7 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CLDN16Q9Y5I7 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
CLDN16Q9Y5I7 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CLDN16Q9Y5I7 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CLDN16Q9Y5I7 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CLDN16Q9Y5I7 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
CLDN16Q9Y5I7 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC20.24■□□□□ 0.83
CLDN16Q9Y5I7 AC097381.1-201ENST00000429019 1296 ntBASIC20.24■□□□□ 0.83
CLDN16Q9Y5I7 RARRES2P6-201ENST00000567333 442 ntBASIC20.24■□□□□ 0.83
CLDN16Q9Y5I7 MIR6821-201ENST00000617625 74 ntBASIC20.24■□□□□ 0.83
CLDN16Q9Y5I7 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CLDN16Q9Y5I7 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CLDN16Q9Y5I7 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
CLDN16Q9Y5I7 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
CLDN16Q9Y5I7 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC20.24■□□□□ 0.83
CLDN16Q9Y5I7 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CLDN16Q9Y5I7 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CLDN16Q9Y5I7 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CLDN16Q9Y5I7 BX005040.4-201ENST00000637145 1518 ntBASIC20.23■□□□□ 0.83
CLDN16Q9Y5I7 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CLDN16Q9Y5I7 GUSBP5-202ENST00000510805 1989 ntBASIC20.23■□□□□ 0.83
CLDN16Q9Y5I7 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
CLDN16Q9Y5I7 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC20.23■□□□□ 0.83
CLDN16Q9Y5I7 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC20.23■□□□□ 0.83
CLDN16Q9Y5I7 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
CLDN16Q9Y5I7 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CLDN16Q9Y5I7 MIR935-201ENST00000401179 91 ntBASIC20.23■□□□□ 0.83
CLDN16Q9Y5I7 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CLDN16Q9Y5I7 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC20.23■□□□□ 0.83
CLDN16Q9Y5I7 YBX1P1-201ENST00000445822 960 ntBASIC20.23■□□□□ 0.83
CLDN16Q9Y5I7 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC20.23■□□□□ 0.83
CLDN16Q9Y5I7 OR7E47P-201ENST00000546390 1422 ntBASIC20.23■□□□□ 0.83
CLDN16Q9Y5I7 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CLDN16Q9Y5I7 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC20.23■□□□□ 0.83
CLDN16Q9Y5I7 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC20.23■□□□□ 0.83
CLDN16Q9Y5I7 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CLDN16Q9Y5I7 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CLDN16Q9Y5I7 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLDN16Q9Y5I7 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLDN16Q9Y5I7 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLDN16Q9Y5I7 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLDN16Q9Y5I7 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLDN16Q9Y5I7 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CLDN16Q9Y5I7 NT5C3AP1-201ENST00000394500 1012 ntBASIC20.22■□□□□ 0.83
CLDN16Q9Y5I7 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CLDN16Q9Y5I7 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLDN16Q9Y5I7 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLDN16Q9Y5I7 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLDN16Q9Y5I7 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLDN16Q9Y5I7 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLDN16Q9Y5I7 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC20.22■□□□□ 0.83
CLDN16Q9Y5I7 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLDN16Q9Y5I7 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
CLDN16Q9Y5I7 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 70.2 ms