Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 YBX1P4-201ENST00000392794 808 ntBASIC19.01■□□□□ 0.63
MMP28Q9H239 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
MMP28Q9H239 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
MMP28Q9H239 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
MMP28Q9H239 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
MMP28Q9H239 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC19.01■□□□□ 0.63
MMP28Q9H239 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
MMP28Q9H239 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
MMP28Q9H239 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC19■□□□□ 0.63
MMP28Q9H239 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC19■□□□□ 0.63
MMP28Q9H239 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
MMP28Q9H239 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
MMP28Q9H239 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
MMP28Q9H239 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
MMP28Q9H239 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
MMP28Q9H239 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC19■□□□□ 0.63
MMP28Q9H239 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC19■□□□□ 0.63
MMP28Q9H239 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
MMP28Q9H239 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC19■□□□□ 0.63
MMP28Q9H239 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
MMP28Q9H239 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC19■□□□□ 0.63
MMP28Q9H239 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC19■□□□□ 0.63
MMP28Q9H239 AF106564.1-201ENST00000607058 2553 ntBASIC18.99■□□□□ 0.63
MMP28Q9H239 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
MMP28Q9H239 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC18.99■□□□□ 0.63
MMP28Q9H239 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC18.99■□□□□ 0.63
MMP28Q9H239 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC18.99■□□□□ 0.63
MMP28Q9H239 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC18.99■□□□□ 0.63
MMP28Q9H239 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
MMP28Q9H239 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC18.99■□□□□ 0.63
MMP28Q9H239 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
MMP28Q9H239 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
MMP28Q9H239 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
MMP28Q9H239 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
MMP28Q9H239 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
MMP28Q9H239 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC18.99■□□□□ 0.63
MMP28Q9H239 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC18.99■□□□□ 0.63
MMP28Q9H239 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
MMP28Q9H239 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
MMP28Q9H239 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
MMP28Q9H239 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
MMP28Q9H239 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
MMP28Q9H239 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
MMP28Q9H239 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC18.98■□□□□ 0.63
MMP28Q9H239 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
MMP28Q9H239 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC18.98■□□□□ 0.63
MMP28Q9H239 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC18.98■□□□□ 0.63
MMP28Q9H239 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
MMP28Q9H239 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC18.98■□□□□ 0.63
MMP28Q9H239 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC18.98■□□□□ 0.63
MMP28Q9H239 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
MMP28Q9H239 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
MMP28Q9H239 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
MMP28Q9H239 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC18.97■□□□□ 0.63
MMP28Q9H239 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
MMP28Q9H239 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
MMP28Q9H239 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC18.97■□□□□ 0.63
MMP28Q9H239 KRT18P24-201ENST00000344739 1156 ntBASIC18.97■□□□□ 0.63
MMP28Q9H239 AC103834.1-201ENST00000520383 144 ntBASIC18.97■□□□□ 0.63
MMP28Q9H239 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC18.97■□□□□ 0.63
MMP28Q9H239 AC120024.1-201ENST00000562672 995 ntBASIC18.97■□□□□ 0.63
MMP28Q9H239 THA1P-201ENST00000590384 1145 ntBASIC18.97■□□□□ 0.63
MMP28Q9H239 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
MMP28Q9H239 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
MMP28Q9H239 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
MMP28Q9H239 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
MMP28Q9H239 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
MMP28Q9H239 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
MMP28Q9H239 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
MMP28Q9H239 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC18.96■□□□□ 0.63
MMP28Q9H239 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
MMP28Q9H239 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC18.96■□□□□ 0.63
MMP28Q9H239 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
MMP28Q9H239 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
MMP28Q9H239 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
MMP28Q9H239 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
MMP28Q9H239 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
MMP28Q9H239 TRIR-205ENST00000592273 783 ntTSL 3 BASIC18.96■□□□□ 0.63
MMP28Q9H239 GAK-223ENST00000628912 497 ntTSL 5 BASIC18.96■□□□□ 0.63
MMP28Q9H239 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC18.96■□□□□ 0.63
MMP28Q9H239 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
MMP28Q9H239 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC18.96■□□□□ 0.63
MMP28Q9H239 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
MMP28Q9H239 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
MMP28Q9H239 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
MMP28Q9H239 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC18.95■□□□□ 0.62
MMP28Q9H239 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC18.95■□□□□ 0.62
MMP28Q9H239 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC18.95■□□□□ 0.62
MMP28Q9H239 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
MMP28Q9H239 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
MMP28Q9H239 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
MMP28Q9H239 AC087742.1-201ENST00000575880 1738 ntBASIC18.94■□□□□ 0.62
MMP28Q9H239 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
MMP28Q9H239 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
MMP28Q9H239 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC18.94■□□□□ 0.62
MMP28Q9H239 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
MMP28Q9H239 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC18.94■□□□□ 0.62
MMP28Q9H239 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
MMP28Q9H239 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
MMP28Q9H239 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC18.94■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms