Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
LSM1O15116 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC21.13■□□□□ 0.97
LSM1O15116 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
LSM1O15116 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
LSM1O15116 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LSM1O15116 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
LSM1O15116 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LSM1O15116 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC21.12■□□□□ 0.97
LSM1O15116 TFPT-201ENST00000391757 774 ntTSL 5 BASIC21.12■□□□□ 0.97
LSM1O15116 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
LSM1O15116 AC239859.2-201ENST00000444165 318 ntBASIC21.12■□□□□ 0.97
LSM1O15116 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC21.12■□□□□ 0.97
LSM1O15116 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
LSM1O15116 C17orf82-201ENST00000623772 1530 ntBASIC21.12■□□□□ 0.97
LSM1O15116 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LSM1O15116 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LSM1O15116 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC21.12■□□□□ 0.97
LSM1O15116 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC21.12■□□□□ 0.97
LSM1O15116 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
LSM1O15116 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LSM1O15116 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
LSM1O15116 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LSM1O15116 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC21.11■□□□□ 0.97
LSM1O15116 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
LSM1O15116 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC21.11■□□□□ 0.97
LSM1O15116 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC21.11■□□□□ 0.97
LSM1O15116 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC21.11■□□□□ 0.97
LSM1O15116 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC21.11■□□□□ 0.97
LSM1O15116 AC010997.5-201ENST00000609182 354 ntBASIC21.11■□□□□ 0.97
LSM1O15116 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC21.11■□□□□ 0.97
LSM1O15116 AL121603.2-201ENST00000557373 2117 ntBASIC21.11■□□□□ 0.97
LSM1O15116 MED17-221ENST00000639724 2317 ntTSL 5 BASIC21.11■□□□□ 0.97
LSM1O15116 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
LSM1O15116 AC004687.1-201ENST00000579003 1625 ntBASIC21.11■□□□□ 0.97
LSM1O15116 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LSM1O15116 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC21.1■□□□□ 0.97
LSM1O15116 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LSM1O15116 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
LSM1O15116 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC21.1■□□□□ 0.97
LSM1O15116 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LSM1O15116 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
LSM1O15116 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
LSM1O15116 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC21.1■□□□□ 0.97
LSM1O15116 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC21.1■□□□□ 0.97
LSM1O15116 AC007375.3-201ENST00000600936 2314 ntBASIC21.1■□□□□ 0.97
LSM1O15116 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LSM1O15116 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LSM1O15116 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC21.09■□□□□ 0.97
LSM1O15116 BID-212ENST00000614949 1988 ntTSL 5 BASIC21.09■□□□□ 0.97
LSM1O15116 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
LSM1O15116 LSM4-201ENST00000252816 986 ntTSL 2 BASIC21.09■□□□□ 0.97
LSM1O15116 AC009299.2-201ENST00000482477 511 ntBASIC21.09■□□□□ 0.97
LSM1O15116 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LSM1O15116 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
LSM1O15116 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
LSM1O15116 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LSM1O15116 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LSM1O15116 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
LSM1O15116 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
LSM1O15116 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC21.08■□□□□ 0.97
LSM1O15116 VGF-203ENST00000611537 1622 ntTSL 5 BASIC21.08■□□□□ 0.97
LSM1O15116 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC21.08■□□□□ 0.97
LSM1O15116 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
LSM1O15116 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
LSM1O15116 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
LSM1O15116 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.96
LSM1O15116 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC21.08■□□□□ 0.96
LSM1O15116 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
LSM1O15116 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC21.08■□□□□ 0.96
LSM1O15116 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
LSM1O15116 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LSM1O15116 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
LSM1O15116 TSPY9P-201ENST00000440215 945 ntBASIC21.07■□□□□ 0.96
LSM1O15116 TSPY11P-201ENST00000442607 1045 ntBASIC21.07■□□□□ 0.96
LSM1O15116 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LSM1O15116 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LSM1O15116 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
LSM1O15116 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC21.06■□□□□ 0.96
LSM1O15116 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LSM1O15116 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
LSM1O15116 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC21.06■□□□□ 0.96
LSM1O15116 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC21.06■□□□□ 0.96
LSM1O15116 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
LSM1O15116 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
LSM1O15116 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC21.06■□□□□ 0.96
LSM1O15116 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
LSM1O15116 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC21.06■□□□□ 0.96
LSM1O15116 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
LSM1O15116 FBXW4P1-201ENST00000426721 2239 ntBASIC21.05■□□□□ 0.96
LSM1O15116 AL451085.2-201ENST00000605085 799 ntBASIC21.05■□□□□ 0.96
LSM1O15116 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC21.05■□□□□ 0.96
LSM1O15116 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
LSM1O15116 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
LSM1O15116 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
LSM1O15116 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
LSM1O15116 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
LSM1O15116 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC21.04■□□□□ 0.96
LSM1O15116 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
LSM1O15116 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
LSM1O15116 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms