Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 AC020928.2-201ENST00000588717 2197 ntBASIC25.74■■□□□ 1.71
HMGCS2P54868 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC25.74■■□□□ 1.71
HMGCS2P54868 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
HMGCS2P54868 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
HMGCS2P54868 AC079630.1-202ENST00000618127 1840 ntBASIC25.74■■□□□ 1.71
HMGCS2P54868 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
HMGCS2P54868 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
HMGCS2P54868 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
HMGCS2P54868 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC25.73■■□□□ 1.71
HMGCS2P54868 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC25.73■■□□□ 1.71
HMGCS2P54868 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
HMGCS2P54868 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
HMGCS2P54868 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC25.73■■□□□ 1.71
HMGCS2P54868 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
HMGCS2P54868 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
HMGCS2P54868 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
HMGCS2P54868 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC25.73■■□□□ 1.71
HMGCS2P54868 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC25.73■■□□□ 1.71
HMGCS2P54868 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC25.73■■□□□ 1.71
HMGCS2P54868 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC25.73■■□□□ 1.71
HMGCS2P54868 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC25.73■■□□□ 1.71
HMGCS2P54868 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC25.73■■□□□ 1.71
HMGCS2P54868 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC25.73■■□□□ 1.71
HMGCS2P54868 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
HMGCS2P54868 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC25.73■■□□□ 1.71
HMGCS2P54868 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC25.72■■□□□ 1.71
HMGCS2P54868 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
HMGCS2P54868 SHD-204ENST00000599689 1729 ntTSL 5 BASIC25.72■■□□□ 1.71
HMGCS2P54868 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC25.72■■□□□ 1.71
HMGCS2P54868 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC25.72■■□□□ 1.71
HMGCS2P54868 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC25.72■■□□□ 1.71
HMGCS2P54868 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
HMGCS2P54868 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
HMGCS2P54868 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
HMGCS2P54868 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
HMGCS2P54868 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
HMGCS2P54868 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC25.71■■□□□ 1.71
HMGCS2P54868 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC25.71■■□□□ 1.71
HMGCS2P54868 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC25.71■■□□□ 1.71
HMGCS2P54868 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC25.71■■□□□ 1.71
HMGCS2P54868 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC25.71■■□□□ 1.71
HMGCS2P54868 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC25.71■■□□□ 1.71
HMGCS2P54868 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC25.71■■□□□ 1.71
HMGCS2P54868 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC25.71■■□□□ 1.71
HMGCS2P54868 GALNS-213ENST00000569433 723 ntTSL 3 BASIC25.71■■□□□ 1.71
HMGCS2P54868 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC25.71■■□□□ 1.71
HMGCS2P54868 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
HMGCS2P54868 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
HMGCS2P54868 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC25.71■■□□□ 1.71
HMGCS2P54868 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.71
HMGCS2P54868 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.71
HMGCS2P54868 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC25.7■■□□□ 1.71
HMGCS2P54868 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC25.7■■□□□ 1.71
HMGCS2P54868 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
HMGCS2P54868 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC25.7■■□□□ 1.7
HMGCS2P54868 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC25.7■■□□□ 1.7
HMGCS2P54868 AC006015.1-201ENST00000429970 570 ntBASIC25.7■■□□□ 1.7
HMGCS2P54868 AC080038.1-201ENST00000611274 1154 ntBASIC25.7■■□□□ 1.7
HMGCS2P54868 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC25.7■■□□□ 1.7
HMGCS2P54868 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC25.7■■□□□ 1.7
HMGCS2P54868 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
HMGCS2P54868 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC25.69■■□□□ 1.7
HMGCS2P54868 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC25.69■■□□□ 1.7
HMGCS2P54868 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC25.69■■□□□ 1.7
HMGCS2P54868 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
HMGCS2P54868 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC25.69■■□□□ 1.7
HMGCS2P54868 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC25.69■■□□□ 1.7
HMGCS2P54868 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
HMGCS2P54868 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
HMGCS2P54868 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC25.69■■□□□ 1.7
HMGCS2P54868 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC25.69■■□□□ 1.7
HMGCS2P54868 DENND3-207ENST00000518347 850 ntTSL 2 BASIC25.69■■□□□ 1.7
HMGCS2P54868 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC25.69■■□□□ 1.7
HMGCS2P54868 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC25.69■■□□□ 1.7
HMGCS2P54868 AC137761.2-201ENST00000561729 223 ntBASIC25.69■■□□□ 1.7
HMGCS2P54868 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC25.69■■□□□ 1.7
HMGCS2P54868 AC145350.3-201ENST00000569033 163 ntBASIC25.69■■□□□ 1.7
HMGCS2P54868 EI24-211ENST00000534546 1544 ntTSL 2 BASIC25.68■■□□□ 1.7
HMGCS2P54868 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC25.68■■□□□ 1.7
HMGCS2P54868 COX20-201ENST00000366528 568 ntTSL 2 BASIC25.68■■□□□ 1.7
HMGCS2P54868 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC25.68■■□□□ 1.7
HMGCS2P54868 HLA-L-209ENST00000420110 1011 ntBASIC25.68■■□□□ 1.7
HMGCS2P54868 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
HMGCS2P54868 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
HMGCS2P54868 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC25.68■■□□□ 1.7
HMGCS2P54868 LINC01124-201ENST00000409786 2117 ntBASIC25.67■■□□□ 1.7
HMGCS2P54868 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
HMGCS2P54868 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
HMGCS2P54868 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC25.67■■□□□ 1.7
HMGCS2P54868 AC016769.1-201ENST00000409132 1010 ntBASIC25.67■■□□□ 1.7
HMGCS2P54868 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC25.67■■□□□ 1.7
HMGCS2P54868 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC25.67■■□□□ 1.7
HMGCS2P54868 BX005040.4-201ENST00000637145 1518 ntBASIC25.67■■□□□ 1.7
HMGCS2P54868 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
HMGCS2P54868 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC25.67■■□□□ 1.7
HMGCS2P54868 AP004607.4-201ENST00000530158 1459 ntBASIC25.66■■□□□ 1.7
HMGCS2P54868 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC25.66■■□□□ 1.7
HMGCS2P54868 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
HMGCS2P54868 AC004854.2-201ENST00000608450 1441 ntBASIC25.66■■□□□ 1.7
HMGCS2P54868 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
Retrieved 100 of 98,524 protein–RNA pairs in 94.7 ms